Generation of random mutant libraries with multiple primers in a single reaction

Por Lu, Xiaozhi, Hora, Bhavna, Cai, Fangping, Gao, Feng
Publicado em 2010

Transmission of Multiple HIV-1 Subtype C Transmitted/founder Viruses into the Same Recipients Was not Determined by Modest Phenotypic Differences

Por Song, Hongshuo, Hora, Bhavna, Giorgi, Elena E., Kumar, Amit, Cai, Fangping, Bhattacharya, Tanmoy, Perelson, Alan S., Gao, Feng
Publicado no Sci Rep (2016)

Simultaneous Detection of Major Drug Resistance Mutations of HIV-1 Subtype B Viruses from Dried Blood Spot Specimens by Multiplex Allele-Specific Assay

Por Zhang, Guoqing, Cai, Fangping, de Rivera, Ivette Lorenzana, Zhou, Zhiyong, Zhang, Jing, Nkengasong, John, Gao, Feng, Yang, Chunfu
Publicado no J Clin Microbiol (2015)

Evolution of Drug-Resistant Viral Populations during Interruption of Antiretroviral Therapy

Por Wang, Dongning, Hicks, Charles B., Goswami, Neela D., Tafoya, Emi, Ribeiro, Ruy M., Cai, Fangping, Perelson, Alan S., Gao, Feng
Publicado em 2011

Analysis of Low-Frequency Mutations Associated with Drug Resistance to Raltegravir before Antiretroviral Treatment

Por Liu, Jia, Miller, Michael D., Danovich, Robert M., Vandergrift, Nathan, Cai, Fangping, Hicks, Charles B., Hazuda, Daria J., Gao, Feng
Publicado em 2011

Clonal amplification and maternal-infant transmission of nevirapine-resistant HIV-1 variants in breast milk following single-dose nevirapine prophylaxis

Por Permar, Sallie R, Salazar, Maria G, Gao, Feng, Cai, Fangping, Learn, Gerald H, Kalilani, Linda, Hahn, Beatrice H, Shaw, George M, Salazar-Gonzalez, Jesus F
Publicado em 2013

Accumulated mutations by 6 months of infection collectively render transmitted/founder HIV-1 significantly less fit

Por Wang, Chu, Liu, Donglai, Zuo, Tao, Hora, Bhavna, Cai, Fangping, Ding, Haitao, Kappes, John, Ochsenbauer, Christina, Kong, Wei, Yu, Xianghui, Bhattacharya, Tanmoy, Perelson, Alan S, Gao, Feng
Publicado no J Infect (2019)

Recombination-mediated escape from primary CD8+ T cells in acute HIV-1 infection

Por Ritchie, Adam John, Cai, Fangping, Smith, Nicola MG, Chen, Sheri, Song, Hongshuo, Brackenridge, Simon, Abdool Karim, Salim S, Korber, Bette T, McMichael, Andrew J, Gao, Feng, Goonetilleke, Nilu
Publicado em 2014

Comprehensive Characterization of the Transmitted/founder env Genes from a Single MSM Cohort in China

Por Chen, Yue, Li, Ning, Zhang, Tong, Huang, Xiaojie, Cai, Fangping, Vandergrift, Nathan, Xin, Ruolei, Meng, Zhefeng, Zhang, Xiaoyan, Jiang, Chunlai, Xu, Xiaoning, Montefiori, David C, Gao, Feng, Wu, Hao
Publicado no J Acquir Immune Defic Syndr (2015)

Streamlined Subpopulation, Subtype, and Recombination Analysis of HIV-1 Half-Genome Sequences Generated by High-Throughput Sequencing

Por Hora, Bhavna, Gulzar, Naila, Chen, Yue, Karagiannis, Konstantinos, Cai, Fangping, Su, Chang, Smith, Krista, Simonyan, Vahan, Shah, Sharaf Ali, Ahmed, Manzoor, Sanchez, Ana M., Stone, Mars, Cohen, Myron S., Denny, Thomas N., Mazumder, Raja, Gao, Feng
Publicado no mSphere (2020)

HIV Resistance and Prevention of Mother-to-Child Transmission Regimen in HIV-Infected Infants in Northern Tanzania

Por Dow, Dorothy E., Schimana, Werner, Nyombi, Balthazar M., Mmbaga, Blandina T., Shayo, Aisa M., Bartlett, John A., Massambu, Charles G., Kifaro, Emmanuel G., Turner, Elizabeth L., DeMarco, Todd, Cai, Fangping, Cunningham, Coleen K., Buchanan, Ann M.
Publicado no AIDS Res Hum Retroviruses (2017)

Simultaneous Detection of Major Drug Resistance Mutations in the Protease and Reverse Transcriptase Genes for HIV-1 Subtype C by Use of a Multiplex Allele-Specific Assay

Por Zhang, Guoqing, Cai, Fangping, Zhou, Zhiyong, DeVos, Joshua, Wagar, Nick, Diallo, Karidia, Zulu, Isaac, Wadonda-Kabondo, Nellie, Stringer, Jeffrey S. A., Weidle, Paul J., Ndongmo, Clement B., Sikazwe, Izukanji, Sarr, Abdoulaye, Kagoli, Matthew, Nkengasong, John, Gao, Feng, Yang, Chunfu
Publicado em 2013

Cooperation between somatic mutation and germline-encoded residues enables antibody recognition of HIV-1 envelope glycans

Por Wu, Nelson R., Nicely, Nathan I., Lee, Esther M., Reed, Rachel K., Watts, Brian E., Cai, Fangping, Walkowicz, William E., Aussedat, Baptiste, Jones, Julia A., Eaton, Amanda, Trama, Ashley M., Alam, S. Munir, Montefiori, David C., Haynes, Barton F., Saunders, Kevin O.
Publicado no PLoS Pathog (2019)

Impact of immune escape mutations on HIV-1 fitness in the context of the cognate transmitted/founder genome

Por Song, Hongshuo, Pavlicek, Jeffrey W, Cai, Fangping, Bhattacharya, Tanmoy, Li, Hui, Iyer, Shilpa S, Bar, Katharine J, Decker, Julie M, Goonetilleke, Nilu, Liu, Michael KP, Berg, Anna, Hora, Bhavna, Drinker, Mark S, Eudailey, Josh, Pickeral, Joy, Moody, M Anthony, Ferrari, Guido, McMichael, Andrew, Perelson, Alan S, Shaw, George M, Hahn, Beatrice H, Haynes, Barton F, Gao, Feng
Publicado em 2012

Postnatally-transmitted HIV-1 Envelope variants have similar neutralization-sensitivity and function to that of nontransmitted breast milk variants

Por Fouda, Genevieve G, Mahlokozera, Tatenda, Salazar-Gonzalez, Jesus F, Salazar, Maria G, Learn, Gerald, Kumar, Surender B, Dennison, S Moses, Russell, Elizabeth, Rizzolo, Katherine, Jaeger, Frederick, Cai, Fangping, Vandergrift, Nathan A, Gao, Feng, Hahn, Beatrice, Shaw, George M, Ochsenbauer, Christina, Swanstrom, Ronald, Meshnick, Steve, Mwapasa, Victor, Kalilani, Linda, Fiscus, Susan, Montefiori, David, Haynes, Barton, Kwiek, Jesse, Alam, S Munir, Permar, Sallie R
Publicado em 2013

Completeness of HIV-1 Envelope Glycan Shield at Transmission Determines Neutralization Breadth

Por Wagh, Kshitij, Kreider, Edward F., Li, Yingying, Barbian, Hannah J., Learn, Gerald H., Giorgi, Elena, Hraber, Peter T., Decker, Timothy G., Smith, Andrew G., Gondim, Marcos V., Gillis, Lindsey, Wandzilak, Jamie, Chuang, Gwo-Yu, Rawi, Reda, Cai, Fangping, Pellegrino, Pierre, Williams, Ian, Overbaugh, Julie, Gao, Feng, Kwong, Peter D., Haynes, Barton F., Shaw, George M., Borrow, Persephone, Seaman, Michael S., Hahn, Beatrice H., Korber, Bette
Publicado no Cell Rep (2018)

Cooperation of B Cell Lineages in Induction of HIV-1-Broadly Neutralizing Antibodies

Por Gao, Feng, Bonsignori, Mattia, Liao, Hua-Xin, Kumar, Amit, Xia, Shi-Mao, Lu, Xiaozhi, Cai, Fangping, Hwang, Kwan-Ki, Song, Hongshuo, Zhou, Tongqing, Lynch, Rebecca M., Alam, S. Munir, Moody, M. Anthony, Ferrari, Guido, Berrong, Mark, Kelsoe, Garnett, Shaw, George M., Hahn, Beatrice H., Montefiori, David C., Kamanga, Gift, Cohen, Myron, Hraber, Peter, Kwong, Peter D., Korber, Bette T., Mascola, John R., Kepler, Thomas B., Haynes, Barton F.
Publicado em 2014

Tracking HIV-1 recombination to resolve its contribution to HIV-1 evolution in natural infection

Por Song, Hongshuo, Giorgi, Elena E., Ganusov, Vitaly V., Cai, Fangping, Athreya, Gayathri, Yoon, Hyejin, Carja, Oana, Hora, Bhavna, Hraber, Peter, Romero-Severson, Ethan, Jiang, Chunlai, Li, Xiaojun, Wang, Shuyi, Li, Hui, Salazar-Gonzalez, Jesus F., Salazar, Maria G., Goonetilleke, Nilu, Keele, Brandon F., Montefiori, David C., Cohen, Myron S., Shaw, George M., Hahn, Beatrice H., McMichael, Andrew J., Haynes, Barton F., Korber, Bette, Bhattacharya, Tanmoy, Gao, Feng
Publicado no Nat Commun (2018)

Vertical T cell immunodominance and epitope entropy determine HIV-1 escape

Por Liu, Michael K.P., Hawkins, Natalie, Ritchie, Adam J., Ganusov, Vitaly V., Whale, Victoria, Brackenridge, Simon, Li, Hui, Pavlicek, Jeffrey W., Cai, Fangping, Rose-Abrahams, Melissa, Treurnicht, Florette, Hraber, Peter, Riou, Catherine, Gray, Clive, Ferrari, Guido, Tanner, Rachel, Ping, Li-Hua, Anderson, Jeffrey A., Swanstrom, Ronald, B, CHAVI Core, Cohen, Myron, Karim, Salim S. Abdool, Haynes, Barton, Borrow, Persephone, Perelson, Alan S., Shaw, George M., Hahn, Beatrice H., Williamson, Carolyn, Korber, Bette T., Gao, Feng, Self, Steve, McMichael, Andrew, Goonetilleke, Nilu
Publicado em 2012

Phenotypic properties of transmitted founder HIV-1

Por Parrish, Nicholas F., Gao, Feng, Li, Hui, Giorgi, Elena E., Barbian, Hannah J., Parrish, Erica H., Zajic, Lara, Iyer, Shilpa S., Decker, Julie M., Kumar, Amit, Hora, Bhavna, Berg, Anna, Cai, Fangping, Hopper, Jennifer, Denny, Thomas N., Ding, Haitao, Ochsenbauer, Christina, Kappes, John C., Galimidi, Rachel P., West, Anthony P., Bjorkman, Pamela J., Wilen, Craig B., Doms, Robert W., O’Brien, Meagan, Bhardwaj, Nina, Borrow, Persephone, Haynes, Barton F., Muldoon, Mark, Theiler, James P., Korber, Bette, Shaw, George M., Hahn, Beatrice H.
Publicado em 2013