A modified GC-specific MAKER gene annotation method reveals improved and novel gene predictions of high and low GC content in Oryza sativa

by Bowman, Megan J., Pulman, Jane A., Liu, Tiffany L., Childs, Kevin L.
Published in BMC Bioinformatics (2017)

Comparative transcriptome analysis provides key insights into gene expression pattern during the formation of nodule-like structures in Brachypodium

by Thomas, Jacklyn, Bowman, Megan J., Vega, Andres, Kim, Ha Ram, Mukherjee, Arijit
Published in Funct Integr Genomics (2018)

Time‑course RNA‑seq analysis provides an improved understanding of gene regulation during the formation of nodule‑like structures in rice

by Thomas, Jacklyn, Hiltenbrand, Ryan, Bowman, Megan J., Kim, Ha Ram, Winn, Mary E., Mukherjee, Arijit
Published in Plant Mol Biol (2020)

Transcriptomics Identifies Modules of Differentially Expressed Genes and Novel Cyclotides in Viola pubescens

by Sternberger, Anne L., Bowman, Megan J., Kruse, Colin P. S., Childs, Kevin L., Ballard, Harvey E., Wyatt, Sarah E.
Published in Front Plant Sci (2019)

Corrigendum: Transcriptomics Identifies Modules of Differentially Expressed Genes and Novel Cyclotides in Viola pubescens

by Sternberger, Anne L., Bowman, Megan J., Kruse, Colin P. S., Childs, Kevin L., Ballard, Harvey E., Wyatt, Sarah E.
Published in Front Plant Sci (2019)

The Effector Repertoire of the Hop Downy Mildew Pathogen Pseudoperonospora humuli

by Purayannur, Savithri, Cano, Liliana M., Bowman, Megan J., Childs, Kevin L., Gent, David H., Quesada-Ocampo, Lina M.
Published in Front Genet (2020)

Evolutionary characteristics of intergenic transcribed regions indicate rare novel genes and widespread noisy transcription in the Poaceae

by Lloyd, John P., Bowman, Megan J., Azodi, Christina B., Sowers, Rosalie P., Moghe, Gaurav D., Childs, Kevin L., Shiu, Shin-Han
Published in Sci Rep (2019)

Uncoupling of Oxidative Stress Resistance and Lifespan in Long-lived isp-1 Mitochondrial Mutants in Caenorhabditis elegans

by Dues, Dylan J., Schaar, Claire E., Johnson, Benjamin K., Bowman, Megan J., Winn, Mary E., Senchuk, Megan M., Van Raamsdonk, Jeremy M.
Published in Free Radic Biol Med (2017)

RNA-Seq Transcriptome Profiling of Upland Cotton (Gossypium hirsutum L.) Root Tissue under Water-Deficit Stress

by Bowman, Megan J., Park, Wonkeun, Bauer, Philip J., Udall, Joshua A., Page, Justin T., Raney, Joshua, Scheffler, Brian E., Jones, Don. C., Campbell, B. Todd
Published 2013

Activation of DAF-16/FOXO by reactive oxygen species contributes to longevity in long-lived mitochondrial mutants in Caenorhabditis elegans

by Senchuk, Megan M., Dues, Dylan J., Schaar, Claire E., Johnson, Benjamin K., Madaj, Zachary B., Bowman, Megan J., Winn, Mary E., Van Raamsdonk, Jeremy M.
Published in PLoS Genet (2018)

Trabectedin Inhibits EWS-FLI1 and Evicts SWI/SNF from Chromatin in a Schedule Dependent Manner

by Harlow, Matt L., Chasse, Maggie H., Boguslawski, Elissa A., Sorensen, Katie M., Gedminas, Jenna M., Kitchen-Goosen, Susan M., Rothbart, Scott B., Taslim, Cenny, Lessnick, Stephen L., Peck, Anderson S., Madaj, Zachary B., Bowman, Megan J., Grohar, Patrick J.
Published in Clin Cancer Res (2019)

NF1 deficiency correlates with estrogen receptor signaling and diminished survival in breast cancer

by Dischinger, Patrick S., Tovar, Elizabeth A., Essenburg, Curt J., Madaj, Zachary B., Gardner, Eve E., Callaghan, Megan E., Turner, Ashley N., Challa, Anil K., Kempston, Tristan, Eagleson, Bryn, Kesterson, Robert A., Bronson, Roderick T., Bowman, Megan J., Graveel, Carrie R., Steensma, Matthew R.
Published in NPJ Breast Cancer (2018)

Lurbinectedin inactivates the Ewing sarcoma oncoprotein EWS-FLI1 by redistributing it within the nucleus

by Harlow, Matt L., Maloney, Nichole, Roland, Joseph, Guillen Navarro, Maria Jose, Easton, Matthew K., Kitchen-Goosen, Susan M., Boguslawski, Elissa, Madaj, Zachary B., Johnson, Ben K., Bowman, Megan J., D’Incalci, Maurizio, Winn, Mary E., Turner, Lisa, Hostetter, Galen, Galmarini, Carlos María, Aviles, Pablo, Grohar, Patrick J.
Published in Cancer Res (2016)

Subgenome Dominance in an Interspecific Hybrid, Synthetic Allopolyploid, and a 140-Year-Old Naturally Established Neo-Allopolyploid Monkeyflower

by Edger, Patrick P., Smith, Ronald, McKain, Michael R., Cooley, Arielle M., Vallejo-Marin, Mario, Yuan, Yaowu, Bewick, Adam J., Ji, Lexiang, Platts, Adrian E., Bowman, Megan J., Childs, Kevin L., Washburn, Jacob D., Schmitz, Robert J., Smith, Gregory D., Pires, J. Chris, Puzey, Joshua R.
Published in Plant Cell (2017)

The genomic landscape of tuberous sclerosis complex

by Martin, Katie R., Zhou, Wanding, Bowman, Megan J., Shih, Juliann, Au, Kit Sing, Dittenhafer-Reed, Kristin E., Sisson, Kellie A., Koeman, Julie, Weisenberger, Daniel J., Cottingham, Sandra L., DeRoos, Steven T., Devinsky, Orrin, Winn, Mary E., Cherniack, Andrew D., Shen, Hui, Northrup, Hope, Krueger, Darcy A., MacKeigan, Jeffrey P.
Published in Nat Commun (2017)

Draft Assembly of Elite Inbred Line PH207 Provides Insights into Genomic and Transcriptome Diversity in Maize

by Hirsch, Candice N., Hirsch, Cory D., Brohammer, Alex B., Bowman, Megan J., Soifer, Ilya, Barad, Omer, Shem-Tov, Doron, Baruch, Kobi, Lu, Fei, Hernandez, Alvaro G., Fields, Christopher J., Wright, Chris L., Koehler, Klaus, Springer, Nathan M., Buckler, Edward, Buell, C. Robin, de Leon, Natalia, Kaeppler, Shawn M., Childs, Kevin L., Mikel, Mark A.
Published in Plant Cell (2016)