Crop Epigenomics: Identifying, Unlocking and Harnessing Cryptic Variation in Crop Genomes

Por Ji, Lexiang, Neumann, Drexel A., Schmitz, Robert J.
Publicado no Mol Plant (2015)

pENCODE: A Plant Encyclopedia of DNA Elements

Por Lane, Amanda K., Niederhuth, Chad E., Ji, Lexiang, Schmitz, Robert J.
Publicado no Annu Rev Genet (2014)

The LSH/DDM1 Homolog MUS-30 Is Required for Genome Stability, but Not for DNA Methylation in Neurospora crassa

Por Basenko, Evelina Y., Kamei, Masayuki, Ji, Lexiang, Schmitz, Robert J., Lewis, Zachary A.
Publicado no PLoS Genet (2016)

Methylated DNA is over-represented in whole-genome bisulfite sequencing data

Por Ji, Lexiang, Sasaki, Takahiko, Sun, Xiaoxiao, Ma, Ping, Lewis, Zachary A., Schmitz, Robert J.
Publicado em 2014

Study of seed hair growth in Populus tomentosa, an important character of female floral bud development

Por Ye, Meixia, Chen, Zhong, Su, Xiaoxing, Ji, Lexiang, Wang, Jia, Liao, Weihua, Ma, Huandi, An, Xinmin
Publicado em 2014

Full-length autonomous transposable elements are preferentially targeted by expression-dependent forms of RNA-directed DNA methylation

Por Panda, Kaushik, Ji, Lexiang, Neumann, Drexel A., Daron, Josquin, Schmitz, Robert J., Slotkin, R. Keith
Publicado no Genome Biol (2016)

Genome-wide redistribution of H3K27me3 is linked to genotoxic stress and defective growth

Por Basenko, Evelina Y., Sasaki, Takahiko, Ji, Lexiang, Prybol, Cameron J., Burckhardt, Rachel M., Schmitz, Robert J., Lewis, Zachary A.
Publicado no Proc Natl Acad Sci U S A (2015)

Base-resolution detection of N(4)-methylcytosine in genomic DNA using 4mC-Tet-assisted-bisulfite- sequencing

Por Yu, Miao, Ji, Lexiang, Neumann, Drexel A., Chung, Dae-hwan, Groom, Joseph, Westpheling, Janet, He, Chuan, Schmitz, Robert J.
Publicado no Nucleic Acids Res (2015)

Dynamic changes in the transcriptome of Populus hopeiensis in response to abscisic acid

Por Chen, Zhong, Ji, Lexiang, Wang, Jia, Jin, Jinpu, Yang, Xiaoyu, Rao, Pian, Gao, Kai, Liao, Weihua, Ye, Meixia, An, Xinmin
Publicado no Sci Rep (2017)

Genomic Distribution of H3K9me2 and DNA Methylation in a Maize Genome

Por West, Patrick T., Li, Qing, Ji, Lexiang, Eichten, Steven R., Song, Jawon, Vaughn, Matthew W., Schmitz, Robert J., Springer, Nathan M.
Publicado em 2014

Histone H1 Limits DNA Methylation in Neurospora crassa

Por Seymour, Michael, Ji, Lexiang, Santos, Alex M., Kamei, Masayuki, Sasaki, Takahiko, Basenko, Evelina Y., Schmitz, Robert J., Zhang, Xiaoyu, Lewis, Zachary A.
Publicado no G3 (Bethesda) (2016)

DNA cytosine hydroxymethylation levels are distinct among non-overlapping classes of peripheral blood leukocytes

Por Hohos, Natalie M., Lee, Kevin, Ji, Lexiang, Yu, Miao, Kandasamy, Muthugapatti M., Phillips, Bradley G., Baile, Clifton A., He, Chuan, Schmitz, Robert J., Meagher, Richard B.
Publicado no J Immunol Methods (2016)

Subsets of Visceral Adipose Tissue Nuclei with Distinct Levels of 5-Hydroxymethylcytosine

Por Yu, Ping, Ji, Lexiang, Lee, Kevin J., Yu, Miao, He, Chuan, Ambati, Suresh, McKinney, Elizabeth C., Jackson, Crystal, Baile, Clifton A., Schmitz, Robert J., Meagher, Richard B.
Publicado no PLoS One (2016)

Maize death acids, 9-lipoxygenase–derived cyclopente(a)nones, display activity as cytotoxic phytoalexins and transcriptional mediators

Por Christensen, Shawn A., Huffaker, Alisa, Kaplan, Fatma, Sims, James, Ziemann, Sebastian, Doehlemann, Gunther, Ji, Lexiang, Schmitz, Robert J., Kolomiets, Michael V., Alborn, Hans T., Mori, Naoki, Jander, Georg, Ni, Xinzhi, Sartor, Ryan C., Byers, Sara, Abdo, Zaid, Schmelz, Eric A.
Publicado no Proc Natl Acad Sci U S A (2015)

The Genome and Methylome of a Beetle with Complex Social Behavior, Nicrophorus vespilloides (Coleoptera: Silphidae)

Por Cunningham, Christopher B., Ji, Lexiang, Wiberg, R. Axel W., Shelton, Jennifer, McKinney, Elizabeth C., Parker, Darren J., Meagher, Richard B., Benowitz, Kyle M., Roy-Zokan, Eileen M., Ritchie, Michael G., Brown, Susan J., Schmitz, Robert J., Moore, Allen J.
Publicado no Genome Biol Evol (2015)

Widespread natural variation of DNA methylation within angiosperms

Por Niederhuth, Chad E., Bewick, Adam J., Ji, Lexiang, Alabady, Magdy S., Kim, Kyung Do, Li, Qing, Rohr, Nicholas A., Rambani, Aditi, Burke, John M., Udall, Joshua A., Egesi, Chiedozie, Schmutz, Jeremy, Grimwood, Jane, Jackson, Scott A., Springer, Nathan M., Schmitz, Robert J.
Publicado no Genome Biol (2016)

On the origin and evolutionary consequences of gene body DNA methylation

Por Bewick, Adam J., Ji, Lexiang, Niederhuth, Chad E., Willing, Eva-Maria, Hofmeister, Brigitte T., Shi, Xiuling, Wang, Li, Lu, Zefu, Rohr, Nicholas A., Hartwig, Benjamin, Kiefer, Christiane, Deal, Roger B., Schmutz, Jeremy, Grimwood, Jane, Stroud, Hume, Jacobsen, Steven E., Schneeberger, Korbinian, Zhang, Xiaoyu, Schmitz, Robert J.
Publicado no Proc Natl Acad Sci U S A (2016)