Combining ATAC-seq with nuclei sorting for discovery of cis-regulatory regions in plant genomes

Por Lu, Zefu, Hofmeister, Brigitte T., Vollmers, Christopher, DuBois, Rebecca M., Schmitz, Robert J.
Publicado no Nucleic Acids Res (2017)

Glabrous Rice 1, encoding a homeodomain protein, regulates trichome development in rice

Por Li, Jinjun, Yuan, Yundong, Lu, Zefu, Yang, Liusha, Gao, Rongcun, Lu, Jingen, Li, Jiayang, Xiong, Guosheng
Publicado no Rice (N Y) (2012)

Stable unmethylated DNA demarcates expressed genes and their cis-regulatory space in plant genomes

Por Crisp, Peter A., Marand, Alexandre P., Noshay, Jaclyn M., Zhou, Peng, Lu, Zefu, Schmitz, Robert J., Springer, Nathan M.
Publicado no Proc Natl Acad Sci U S A (2020)

Tissue-Specific Ubiquitination by IPA1 INTERACTING PROTEIN1 Modulates IPA1 Protein Levels to Regulate Plant Architecture in Rice

Por Wang, Jing, Yu, Hong, Xiong, Guosheng, Lu, Zefu, Jiao, Yongqing, Meng, Xiangbing, Liu, Guifu, Chen, Xuewei, Wang, Yonghong, Li, Jiayang
Publicado no Plant Cell (2017)

The DNA binding landscape of the maize AUXIN RESPONSE FACTOR family

Por Galli, Mary, Khakhar, Arjun, Lu, Zefu, Chen, Zongliang, Sen, Sidharth, Joshi, Trupti, Nemhauser, Jennifer L., Schmitz, Robert J., Gallavotti, Andrea
Publicado no Nat Commun (2018)

Strigolactone Signaling in Arabidopsis Regulates Shoot Development by Targeting D53-Like SMXL Repressor Proteins for Ubiquitination and Degradation

Por Wang, Lei, Wang, Bing, Jiang, Liang, Liu, Xue, Li, Xilong, Lu, Zefu, Meng, Xiangbing, Wang, Yonghong, Smith, Steven M., Li, Jiayang
Publicado no Plant Cell (2015)

A Qualitative Change in the Transcriptome Occurs after the First Cell Cycle and Coincides with Lumen Establishment during MDCKII Cystogenesis

Por Wang, Tianfang, Kwon, Sang-Ho, Peng, Xiao, Urdy, Severine, Lu, Zefu, Schmitz, Robert J., Dalton, Stephen, Mostov, Keith E., Zhao, Shaying
Publicado no iScience (2020)

Genome-Wide Binding Analysis of the Transcription Activator IDEAL PLANT ARCHITECTURE1 Reveals a Complex Network Regulating Rice Plant Architecture([W])

Por Lu, Zefu, Yu, Hong, Xiong, Guosheng, Wang, Jing, Jiao, Yongqing, Liu, Guifu, Jing, Yanhui, Meng, Xiangbing, Hu, Xingming, Qian, Qian, Fu, Xiangdong, Wang, Yonghong, Li, Jiayang
Publicado em 2013

Monitoring the interplay between transposable element families and DNA methylation in maize

Por Noshay, Jaclyn M., Anderson, Sarah N., Zhou, Peng, Ji, Lexiang, Ricci, William, Lu, Zefu, Stitzer, Michelle C., Crisp, Peter A., Hirsch, Candice N., Zhang, Xiaoyu, Schmitz, Robert J., Springer, Nathan M.
Publicado no PLoS Genet (2019)

The Gossypium longicalyx Genome as a Resource for Cotton Breeding and Evolution

Por Grover, Corrinne E., Pan, Mengqiao, Yuan, Daojun, Arick, Mark A., Hu, Guanjing, Brase, Logan, Stelly, David M., Lu, Zefu, Schmitz, Robert J., Peterson, Daniel G., Wendel, Jonathan F., Udall, Joshua A.
Publicado no G3 (Bethesda) (2020)

IPA1 functions as a downstream transcription factor repressed by D53 in strigolactone signaling in rice

Por Song, Xiaoguang, Lu, Zefu, Yu, Hong, Shao, Gaoneng, Xiong, Jinsong, Meng, Xiangbing, Jing, Yanhui, Liu, Guifu, Xiong, Guosheng, Duan, Jingbo, Yao, Xue-Feng, Liu, Chun-Ming, Li, Hongqing, Wang, Yonghong, Li, Jiayang
Publicado no Cell Res (2017)

On the origin and evolutionary consequences of gene body DNA methylation

Por Bewick, Adam J., Ji, Lexiang, Niederhuth, Chad E., Willing, Eva-Maria, Hofmeister, Brigitte T., Shi, Xiuling, Wang, Li, Lu, Zefu, Rohr, Nicholas A., Hartwig, Benjamin, Kiefer, Christiane, Deal, Roger B., Schmutz, Jeremy, Grimwood, Jane, Stroud, Hume, Jacobsen, Steven E., Schneeberger, Korbinian, Zhang, Xiaoyu, Schmitz, Robert J.
Publicado no Proc Natl Acad Sci U S A (2016)

Single-cell RNA sequencing of developing maize ears facilitates functional analysis and trait candidate gene discovery

Por Xu, Xiaosa, Crow, Megan, Rice, Brian R., Li, Forrest, Harris, Benjamin, Liu, Lei, Demesa-Arevalo, Edgar, Lu, Zefu, Wang, Liya, Fox, Nathan, Wang, Xiaofei, Drenkow, Jorg, Luo, Anding, Char, Si Nian, Yang, Bing, Sylvester, Anne W., Gingeras, Thomas, Schmitz, Robert J., Ware, Doreen, Lipka, Alexander E., Gillis, Jesse, Jackson, David
Publicado no Dev Cell (2021)

Widespread Long-range Cis-Regulatory Elements in the Maize Genome

Por Ricci, William A., Lu, Zefu, Ji, Lexiang, Marand, Alexandre P., Ethridge, Christina L., Murphy, Nathalie G., Noshay, Jaclyn M., Galli, Mary, Mejía-Guerra, María Katherine, Colomé-Tatché, Maria, Johannes, Frank, Rowley, M. Jordan, Corces, Victor G., Zhai, Jixian, Scanlon, Michael J., Buckler, Edward S., Gallavotti, Andrea, Springer, Nathan M., Schmitz, Robert J., Zhang, Xiaoyu
Publicado no Nat Plants (2019)