A Mixture Modeling Framework for Differential Analysis of High-Throughput Data

por Taslim, Cenny, Lin, Shili
Publicado em 2014

DIME: R-package for identifying differential ChIP-seq based on an ensemble of mixture models

por Taslim, Cenny, Huang, Tim, Lin, Shili
Publicado em 2011

BOG: R-package for Bacterium and virus analysis of Orthologous Groups

por Park, Jincheol, Taslim, Cenny, Lin, Shili
Publicado no Comput Struct Biotechnol J (2015)

Integrative genome-wide chromatin signature analysis using finite mixture models

por Taslim, Cenny, Lin, Shili, Huang, Kun, Huang, Tim Hui-Ming
Publicado em 2012

Identification of two types of GGAA-microsatellites and their roles in EWS/FLI binding and gene regulation in Ewing sarcoma

por Johnson, Kirsten M., Taslim, Cenny, Saund, Ranajeet S., Lessnick, Stephen L.
Publicado no PLoS One (2017)

Integrated analysis identifies a class of androgen-responsive genes regulated by short combinatorial long-range mechanism facilitated by CTCF

por Taslim, Cenny, Chen, Zhong, Huang, Kun, Huang, Tim Hui-Ming, Wang, Qianben, Lin, Shili
Publicado em 2012

Comparative study on ChIP-seq data: normalization and binding pattern characterization

por Taslim, Cenny, Wu, Jiejun, Yan, Pearlly, Singer, Greg, Parvin, Jeffrey, Huang, Tim, Lin, Shili, Huang, Kun
Publicado em 2009

Transcriptomic analysis functionally maps the intrinsically disordered domain of EWS/FLI and reveals novel transcriptional dependencies for oncogenesis

por Theisen, Emily R., Miller, Kyle R., Showpnil, Iftekhar A., Taslim, Cenny, Pishas, Kathleen I., Lessnick, Stephen L.
Publicado no Genes Cancer (2019)

Investigating the role of LSD2 as an epigenetic regulator in Ewing sarcoma

por Patel, Priyal O., Pishas, Kathleen I., Taslim, Cenny, Selich-Anderson, Julia, Theisen, Emily R., Lessnick, Stephen L.
Publicado no Oncotarget (2019)

Mapping the Structure-Function Relationships of Disordered Oncogenic Transcription Factors Using Transcriptomic Analysis

por Showpnil, Iftekhar A., Miller, Kyle R., Taslim, Cenny, Pishas, Kathleen I., Lessnick, Stephen L., Theisen, Emily R.
Publicado no J Vis Exp (2020)

Practical Guidelines for the Comprehensive Analysis of ChIP-seq Data

por Bailey, Timothy, Krajewski, Pawel, Ladunga, Istvan, Lefebvre, Celine, Li, Qunhua, Liu, Tao, Madrigal, Pedro, Taslim, Cenny, Zhang, Jie
Publicado em 2013

Persistent Alterations of Gene Expression Profiling of Human Peripheral Blood Mononuclear Cells From Smokers

por Weng, Daniel Y., Chen, Jinguo, Taslim, Cenny, Hsu, Ping-Ching, Marian, Catalin, David, Sean P., Loffredo, Christopher A., Shields, Peter G.
Publicado no Mol Carcinog (2015)

Chromatin profiling reveals relocalization of lysine-specific demethylase 1 by an oncogenic fusion protein

por Theisen, Emily R., Selich-Anderson, Julia, Miller, Kyle R., Tanner, Jason M., Taslim, Cenny, Pishas, Kathleen I., Sharma, Sunil, Lessnick, Stephen L.
Publicado no Epigenetics (2020)

A Quantitative Proteomic Workflow for Characterization of Frozen Clinical Biopsies: Laser Capture Microdissection Coupled with Label-Free Mass Spectrometry

por Shapiro, John P., Biswas, Sabyasachi, Merchant, Anand S., Satoskar, Anjali, Taslim, Cenny, Lin, Shili, Rovin, Brad H., Sen, Chandan K., Roy, Sashwati, Freitas, Michael A.
Publicado em 2012

Racial differences in genome-wide methylation profiling and gene expression in breast tissues from healthy women

por Song, Min-Ae, Brasky, Theodore M, Marian, Catalin, Weng, Daniel Y, Taslim, Cenny, Dumitrescu, Ramona G, Llanos, Adana A, Freudenheim, Jo L, Shields, Peter G
Publicado no Epigenetics (2015)

Role for the EWS domain of EWS/FLI in binding GGAA-microsatellites required for Ewing sarcoma anchorage independent growth

por Johnson, Kirsten M., Mahler, Nathan R., Saund, Ranajeet S., Theisen, Emily R., Taslim, Cenny, Callender, Nathan W., Crow, Jesse C., Miller, Kyle R., Lessnick, Stephen L.
Publicado no Proc Natl Acad Sci U S A (2017)

The FLI portion of EWS/FLI contributes a transcriptional regulatory function that is distinct and separable from its DNA-binding function in Ewing sarcoma

por Boone, Megann A., Taslim, Cenny, Crow, Jesse C., Selich-Anderson, Julia, Byrum, Andrea K., Showpnil, Iftekhar A., Sunkel, Benjamin D., Wang, Meng, Stanton, Benjamin Z., Theisen, Emily R., Lessnick, Stephen L.
Publicado no Oncogene (2021)

Trabectedin Inhibits EWS-FLI1 and Evicts SWI/SNF from Chromatin in a Schedule Dependent Manner

por Harlow, Matt L., Chasse, Maggie H., Boguslawski, Elissa A., Sorensen, Katie M., Gedminas, Jenna M., Kitchen-Goosen, Susan M., Rothbart, Scott B., Taslim, Cenny, Lessnick, Stephen L., Peck, Anderson S., Madaj, Zachary B., Bowman, Megan J., Grohar, Patrick J.
Publicado no Clin Cancer Res (2019)

Discovery and replication of microRNAs for breast cancer risk using genome-wide profiling

por Taslim, Cenny, Weng, Daniel Y., Brasky, Theodore M., Dumitrescu, Ramona G., Huang, Kun, Kallakury, Bhaskar V.S., Krishnan, Shiva, Llanos, Adana A., Marian, Catalin, McElroy, Joseph, Schneider, Sallie S., Spear, Scott L., Troester, Melissa A., Freudenheim, Jo L., Geyer, Susan, Shields, Peter G.
Publicado no Oncotarget (2016)

Therapeutic targeting of KDM1A/LSD1 in Ewing sarcoma with SP-2509 engages the endoplasmic reticulum stress response

por Pishas, Kathleen I., Drenberg, Christina D., Taslim, Cenny, Theisen, Emily R., Johnson, Kirsten M., Saund, Ranajeet S., Pop, Ioana L, Crompton, Brian D., Lawlor, Elizabeth R, Tirode, Franck, Mora, Jaume, Delattre, Olivier, Beckerle, Mary C., Callen, David F., Sharma, Sunil, Lessnick., Stephen L.
Publicado no Mol Cancer Ther (2018)