Two-Phase Resolution of Polyploidy in the Arabidopsis Metabolic Network Gives Rise to Relative and Absolute Dosage Constraints([W])

Por Bekaert, Michaël, Edger, Patrick P., Pires, J. Chris, Conant, Gavin C.
Publicado em 2011

Positionally-conserved but sequence-diverged: identification of long non-coding RNAs in the Brassicaceae and Cleomaceae

Por Mohammadin, Setareh, Edger, Patrick P., Pires, J. Chris, Schranz, Michael Eric
Publicado no BMC Plant Biol (2015)

Whole Genome and Tandem Duplicate Retention Facilitated Glucosinolate Pathway Diversification in the Mustard Family

Por Hofberger, Johannes A., Lyons, Eric, Edger, Patrick P., Chris Pires, J., Eric Schranz, M.
Publicado em 2013

Comparative Phylogenomics Uncovers the Impact of Symbiotic Associations on Host Genome Evolution

Por Delaux, Pierre-Marc, Varala, Kranthi, Edger, Patrick P., Coruzzi, Gloria M., Pires, J. Chris, Ané, Jean-Michel
Publicado em 2014

Secondary Structure Analyses of the Nuclear rRNA Internal Transcribed Spacers and Assessment of Its Phylogenetic Utility across the Brassicaceae (Mustards)

Por Edger, Patrick P., Tang, Michelle, Bird, Kevin A., Mayfield, Dustin R., Conant, Gavin, Mummenhoff, Klaus, Koch, Marcus A., Pires, J. Chris
Publicado em 2014

A Whole-Transcriptome Approach to Evaluating Reference Genes for Quantitative Gene Expression Studies: A Case Study in Mimulus

Por Stanton, Kimmy A., Edger, Patrick P., Puzey, Joshua R., Kinser, Taliesin, Cheng, Philip, Vernon, Daniel M., Forsthoefel, Nancy R., Cooley, Arielle M.
Publicado no G3 (Bethesda) (2017)

Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels

Por Duarte, Jill M, Wall, P Kerr, Edger, Patrick P, Landherr, Lena L, Ma, Hong, Pires, J Chris, Leebens-Mack, Jim, dePamphilis, Claude W
Publicado em 2010

Resolving deep relationships of PACMAD grasses: a phylogenomic approach

Por Cotton, Joseph L., Wysocki, William P., Clark, Lynn G., Kelchner, Scot A., Pires, J Chris, Edger, Patrick P., Mayfield-Jones, Dustin, Duvall, Melvin R.
Publicado no BMC Plant Biol (2015)

Selecting Superior De Novo Transcriptome Assemblies: Lessons Learned by Leveraging the Best Plant Genome

Por Honaas, Loren A., Wafula, Eric K., Wickett, Norman J., Der, Joshua P., Zhang, Yeting, Edger, Patrick P., Altman, Naomi S., Pires, J. Chris, Leebens-Mack, James H., dePamphilis, Claude W.
Publicado no PLoS One (2016)

Evolutionary relationships in Panicoid grasses based on plastome phylogenomics (Panicoideae; Poaceae)

Por Burke, Sean V., Wysocki, William P., Zuloaga, Fernando O., Craine, Joseph M., Pires, J. Chris, Edger, Patrick P., Mayfield-Jones, Dustin, Clark, Lynn G., Kelchner, Scot A., Duvall, Melvin R.
Publicado no BMC Plant Biol (2016)

Polyploid Evolution of the Brassicaceae during the Cenozoic Era

Por Kagale, Sateesh, Robinson, Stephen J., Nixon, John, Xiao, Rong, Huebert, Terry, Condie, Janet, Kessler, Dallas, Clarke, Wayne E., Edger, Patrick P., Links, Matthew G., Sharpe, Andrew G., Parkin, Isobel A.P.
Publicado em 2014

Plastid phylogenomics of the cool-season grass subfamily: clarification of relationships among early-diverging tribes

Por Saarela, Jeffery M., Wysocki, William P., Barrett, Craig F., Soreng, Robert J., Davis, Jerrold I., Clark, Lynn G., Kelchner, Scot A., Pires, J. Chris, Edger, Patrick P., Mayfield, Dustin R., Duvall, Melvin R.
Publicado no AoB Plants (2015)

Resolution of Brassicaceae Phylogeny Using Nuclear Genes Uncovers Nested Radiations and Supports Convergent Morphological Evolution

Por Huang, Chien-Hsun, Sun, Renran, Hu, Yi, Zeng, Liping, Zhang, Ning, Cai, Liming, Zhang, Qiang, Koch, Marcus A., Al-Shehbaz, Ihsan, Edger, Patrick P., Pires, J. Chris, Tan, Dun-Yan, Zhong, Yang, Ma, Hong
Publicado no Mol Biol Evol (2016)

Elucidating steroid alkaloid biosynthesis in Veratrum californicum: production of verazine in Sf9 cells

Por Augustin, Megan M., Ruzicka, Dan R., Shukla, Ashutosh K., Augustin, Jörg M., Starks, Courtney M., O’Neil-Johnson, Mark, McKain, Michael R., Evans, Bradley S., Barrett, Matt D., Smithson, Ann, Wong, Gane Ka-Shu, Deyholos, Michael K., Edger, Patrick P., Pires, J. Chris, Leebens-Mack, James H., Mann, David A., Kutchan, Toni M.
Publicado no Plant J (2015)

The pangenome of an agronomically important crop plant Brassica oleracea

Por Golicz, Agnieszka A., Bayer, Philipp E., Barker, Guy C., Edger, Patrick P., Kim, HyeRan, Martinez, Paula A., Chan, Chon Kit Kenneth, Severn-Ellis, Anita, McCombie, W. Richard, Parkin, Isobel A. P., Paterson, Andrew H., Pires, J. Chris, Sharpe, Andrew G., Tang, Haibao, Teakle, Graham R., Town, Christopher D., Batley, Jacqueline, Edwards, David
Publicado no Nat Commun (2016)

Diversity of ABC transporter genes across the plant kingdom and their potential utility in biotechnology

Por Lane, Thomas S., Rempe, Caroline S., Davitt, Jack, Staton, Margaret E., Peng, Yanhui, Soltis, Douglas Edward, Melkonian, Michael, Deyholos, Michael, Leebens-Mack, James H., Chase, Mark, Rothfels, Carl J., Stevenson, Dennis, Graham, Sean W., Yu, Jun, Liu, Tao, Pires, J. Chris, Edger, Patrick P., Zhang, Yong, Xie, Yinlong, Zhu, Ying, Carpenter, Eric, Wong, Gane Ka-Shu, Stewart, C. Neal
Publicado no BMC Biotechnol (2016)

The butterfly plant arms-race escalated by gene and genome duplications

Por Edger, Patrick P., Heidel-Fischer, Hanna M., Bekaert, Michaël, Rota, Jadranka, Glöckner, Gernot, Platts, Adrian E., Heckel, David G., Der, Joshua P., Wafula, Eric K., Tang, Michelle, Hofberger, Johannes A., Smithson, Ann, Hall, Jocelyn C., Blanchette, Matthieu, Bureau, Thomas E., Wright, Stephen I., dePamphilis, Claude W., Eric Schranz, M., Barker, Michael S., Conant, Gavin C., Wahlberg, Niklas, Vogel, Heiko, Pires, J. Chris, Wheat, Christopher W.
Publicado no Proc Natl Acad Sci U S A (2015)

Evaluating Methods for Isolating Total RNA and Predicting the Success of Sequencing Phylogenetically Diverse Plant Transcriptomes

Por Johnson, Marc T. J., Carpenter, Eric J., Tian, Zhijian, Bruskiewich, Richard, Burris, Jason N., Carrigan, Charlotte T., Chase, Mark W., Clarke, Neil D., Covshoff, Sarah, dePamphilis, Claude W., Edger, Patrick P., Goh, Falicia, Graham, Sean, Greiner, Stephan, Hibberd, Julian M., Jordon-Thaden, Ingrid, Kutchan, Toni M., Leebens-Mack, James, Melkonian, Michael, Miles, Nicholas, Myburg, Henrietta, Patterson, Jordan, Pires, J. Chris, Ralph, Paula, Rolf, Megan, Sage, Rowan F., Soltis, Douglas, Soltis, Pamela, Stevenson, Dennis, Stewart, C. Neal, Surek, Barbara, Thomsen, Christina J. M., Villarreal, Juan Carlos, Wu, Xiaolei, Zhang, Yong, Deyholos, Michael K., Wong, Gane Ka-Shu
Publicado em 2012

The pineapple genome and the evolution of CAM photosynthesis

Por Ming, Ray, VanBuren, Robert, Wai, Ching Man, Tang, Haibao, Schatz, Michael C., Bowers, John E., Lyons, Eric, Wang, Ming-Li, Chen, Jung, Biggers, Eric, Zhang, Jisen, Huang, Lixian, Zhang, Lingmao, Miao, Wenjing, Zhang, Jian, Ye, Zhangyao, Miao, Chenyong, Lin, Zhicong, Wang, Hao, Zhou, Hongye, Yim, Won C., Priest, Henry D., Zheng, Chunfang, Woodhouse, Margaret, Edger, Patrick P., Guyot, Romain, Guo, Hao-Bo, Guo, Hong, Zheng, Guangyong, Singh, Ratnesh, Sharma, Anupma, Min, Xiangjia, Zheng, Yun, Lee, Hayan, Gurtowski, James, Sedlazeck, Fritz J., Harkess, Alex, McKain, Michael R., Liao, Zhenyang, Fang, Jingping, Liu, Juan, Zhang, Xiaodan, Zhang, Qing, Hu, Weichang, Qin, Yuan, Wang, Kai, Chen, Li-Yu, Shirley, Neil, Lin, Yann-Rong, Liu, Li-Yu, Hernandez, Alvaro G., Wright, Chris L., Bulone, Vincent, Tuskan, Gerald A., Heath, Katy, Zee, Francis, Moore, Paul H., Sunkar, Ramanjulu, Leebens-Mack, James H., Mockler, Todd, Bennetzen, Jeffrey L., Freeling, Michael, Sankoff, David, Paterson, Andrew H., Zhu, Xinguang, Yang, Xiaohan, Smith, J. Andrew C., Cushman, John C., Paull, Robert E., Yu, Qingyi
Publicado no Nat Genet (2015)