Robust DNA Isolation and High-throughput Sequencing Library Construction for Herbarium Specimens

par Saeidi, Saman, McKain, Michael R., Kellogg, Elizabeth A.
Publié dans J Vis Exp (2018)

Evolutionary Dynamics of Transposable Elements Following a Shared Polyploidization Event in the Tribe Andropogoneae

par Ramachandran, Dhanushya, McKain, Michael R., Kellogg, Elizabeth A., Hawkins, Jennifer S.
Publié dans G3 (Bethesda) (2020)

Verdant: automated annotation, alignment and phylogenetic analysis of whole chloroplast genomes

par McKain, Michael R, Hartsock, Ryan H, Wohl, Molly M, Kellogg, Elizabeth A
Publié dans Bioinformatics (2017)

Practical considerations for plant phylogenomics

par McKain, Michael R., Johnson, Matthew G., Uribe‐Convers, Simon, Eaton, Deren, Yang, Ya
Publié dans Appl Plant Sci (2018)

Specimen-based analysis of morphology and the environment in ecologically dominant grasses: the power of the herbarium

par McAllister, Christine A., McKain, Michael R., Li, Mao, Bookout, Bess, Kellogg, Elizabeth A.
Publié dans Philos Trans R Soc Lond B Biol Sci (2019)

Drosophila melanogaster retrotransposon and inverted repeat-derived endogenous siRNAs are differentially processed in distinct cellular locations

par Harrington, Andrew W., McKain, Michael R., Michalski, Daniel, Bauer, Kaylyn M., Daugherty, Joshua M., Steiniger, Mindy
Publié dans BMC Genomics (2017)

Reply to: Revisiting the origin of octoploid strawberry

par Edger, Patrick P., McKain, Michael R., Yocca, Alan E., Knapp, Steven J., Qiao, Qin, Zhang, Ticao
Publié dans Nat Genet (2019)

Ancient Polyploidy and Genome Evolution in Palms

par Barrett, Craig F, McKain, Michael R, Sinn, Brandon T, Ge, Xue-Jun, Zhang, Yuqu, Antonelli, Alexandre, Bacon, Christine D
Publié dans Genome Biol Evol (2019)

Hybridization History and Repetitive Element Content in the Genome of a Homoploid Hybrid, Yucca gloriosa (Asparagaceae)

par Heyduk, Karolina, McAssey, Edward V., Grimwood, Jane, Shu, Shengqiang, Schmutz, Jeremy, McKain, Michael R., Leebens-Mack, Jim
Publié dans Front Plant Sci (2021)

The draft genome of the C(3) panicoid grass species Dichanthelium oligosanthes

par Studer, Anthony J., Schnable, James C., Weissmann, Sarit, Kolbe, Allison R., McKain, Michael R., Shao, Ying, Cousins, Asaph B., Kellogg, Elizabeth A., Brutnell, Thomas P.
Publié dans Genome Biol (2016)

Allopolyploidy, diversification, and the Miocene grassland expansion

par Estep, Matt C., McKain, Michael R., Vela Diaz, Dilys, Zhong, Jinshun, Hodge, John G., Hodkinson, Trevor R., Layton, Daniel J., Malcomber, Simon T., Pasquet, Rémy, Kellogg, Elizabeth A.
Publié 2014

A Phylogenomic Assessment of Ancient Polyploidy and Genome Evolution across the Poales

par McKain, Michael R., Tang, Haibao, McNeal, Joel R., Ayyampalayam, Saravanaraj, Davis, Jerrold I., dePamphilis, Claude W., Givnish, Thomas J., Pires, J. Chris, Stevenson, Dennis Wm., Leebens-Mack, James H.
Publié dans Genome Biol Evol (2016)

Chromosome-Scale Genome for a Red-Fruited, Perpetual Flowering and Runnerless Woodland Strawberry (Fragaria vesca)

par Alger, Elizabeth I., Platts, Adrian E., Deb, Sontosh K., Luo, Xi, Ou, Shujun, Cao, Yao, Hummer, Kim E., Xiong, Zhiyong, Knapp, Steven J., Liu, Zhongchi, McKain, Michael R., Edger, Patrick P.
Publié dans Front Genet (2021)

Continued Adaptation of C(4) Photosynthesis After an Initial Burst of Changes in the Andropogoneae Grasses

par Bianconi, Matheus E, Hackel, Jan, Vorontsova, Maria S, Alberti, Adriana, Arthan, Watchara, Burke, Sean V, Duvall, Melvin R, Kellogg, Elizabeth A, Lavergne, Sébastien, McKain, Michael R, Meunier, Alexandre, Osborne, Colin P, Traiperm, Paweena, Christin, Pascal-Antoine, Besnard, Guillaume
Publié dans Syst Biol (2020)

Phylogeny and multiple independent whole‐genome duplication events in the Brassicales

par Mabry, Makenzie E., Brose, Julia M., Blischak, Paul D., Sutherland, Brittany, Dismukes, Wade T., Bottoms, Christopher A., Edger, Patrick P., Washburn, Jacob D., An, Hong, Hall, Jocelyn C., McKain, Michael R., Al‐Shehbaz, Ihsan, Barker, Michael S., Schranz, M. Eric, Conant, Gavin C., Pires, J. Chris
Publié dans Am J Bot (2020)

Multiple Polyploidy Events in the Early Radiation of Nodulating and Nonnodulating Legumes

par Cannon, Steven B., McKain, Michael R., Harkess, Alex, Nelson, Matthew N., Dash, Sudhansu, Deyholos, Michael K., Peng, Yanhui, Joyce, Blake, Stewart, Charles N., Rolf, Megan, Kutchan, Toni, Tan, Xuemei, Chen, Cui, Zhang, Yong, Carpenter, Eric, Wong, Gane Ka-Shu, Doyle, Jeff J., Leebens-Mack, Jim
Publié dans Mol Biol Evol (2015)

Subgenome Dominance in an Interspecific Hybrid, Synthetic Allopolyploid, and a 140-Year-Old Naturally Established Neo-Allopolyploid Monkeyflower

par Edger, Patrick P., Smith, Ronald, McKain, Michael R., Cooley, Arielle M., Vallejo-Marin, Mario, Yuan, Yaowu, Bewick, Adam J., Ji, Lexiang, Platts, Adrian E., Bowman, Megan J., Childs, Kevin L., Washburn, Jacob D., Schmitz, Robert J., Smith, Gregory D., Pires, J. Chris, Puzey, Joshua R.
Publié dans Plant Cell (2017)

Elucidating steroid alkaloid biosynthesis in Veratrum californicum: production of verazine in Sf9 cells

par Augustin, Megan M., Ruzicka, Dan R., Shukla, Ashutosh K., Augustin, Jörg M., Starks, Courtney M., O’Neil-Johnson, Mark, McKain, Michael R., Evans, Bradley S., Barrett, Matt D., Smithson, Ann, Wong, Gane Ka-Shu, Deyholos, Michael K., Edger, Patrick P., Pires, J. Chris, Leebens-Mack, James H., Mann, David A., Kutchan, Toni M.
Publié dans Plant J (2015)

Single-molecule sequencing and optical mapping yields an improved genome of woodland strawberry (Fragaria vesca) with chromosome-scale contiguity

par Edger, Patrick P, VanBuren, Robert, Colle, Marivi, Poorten, Thomas J, Wai, Ching Man, Niederhuth, Chad E, Alger, Elizabeth I, Ou, Shujun, Acharya, Charlotte B, Wang, Jie, Callow, Pete, McKain, Michael R, Shi, Jinghua, Collier, Chad, Xiong, Zhiyong, Mower, Jeffrey P, Slovin, Janet P, Hytönen, Timo, Jiang, Ning, Childs, Kevin L, Knapp, Steven J
Publié dans Gigascience (2017)

A genome triplication associated with early diversification of the core eudicots

par Jiao, Yuannian, Leebens-Mack, Jim, Ayyampalayam, Saravanaraj, Bowers, John E, McKain, Michael R, McNeal, Joel, Rolf, Megan, Ruzicka, Daniel R, Wafula, Eric, Wickett, Norman J, Wu, Xiaolei, Zhang, Yong, Wang, Jun, Zhang, Yeting, Carpenter, Eric J, Deyholos, Michael K, Kutchan, Toni M, Chanderbali, Andre S, Soltis, Pamela S, Stevenson, Dennis W, McCombie, Richard, Pires, J Chris, Wong, Gane Ka-Shu, Soltis, Douglas E, dePamphilis, Claude W
Publié 2012