The Release 5.1 Annotation of Drosophila melanogaster Heterochromatin

Autor Smith, Christopher D., Shu, ShengQiang, Mungall, Christopher J., Karpen, Gary H.
Vydáno 2007

AmiGO: online access to ontology and annotation data

Autor Carbon, Seth, Ireland, Amelia, Mungall, Christopher J., Shu, ShengQiang, Marshall, Brad, Lewis, Suzanna
Vydáno 2009

Hybridization History and Repetitive Element Content in the Genome of a Homoploid Hybrid, Yucca gloriosa (Asparagaceae)

Autor Heyduk, Karolina, McAssey, Edward V., Grimwood, Jane, Shu, Shengqiang, Schmutz, Jeremy, McKain, Michael R., Leebens-Mack, Jim
Vydáno v Front Plant Sci (2021)

A computational and experimental approach to validating annotations and gene predictions in the Drosophila melanogaster genome

Autor Yandell, Mark, Bailey, Adina M., Misra, Sima, Shu, ShengQiang, Wiel, Colin, Evans-Holm, Martha, Celniker, Susan E., Rubin, Gerald M.
Vydáno 2005

Fine-scale variation in meiotic recombination in Mimulus inferred from population shotgun sequencing

Autor Hellsten, Uffe, Wright, Kevin M., Jenkins, Jerry, Shu, Shengqiang, Yuan, Yaowu, Wessler, Susan R., Schmutz, Jeremy, Willis, John H., Rokhsar, Daniel S.
Vydáno 2013

Phytozome: a comparative platform for green plant genomics

Autor Goodstein, David M., Shu, Shengqiang, Howson, Russell, Neupane, Rochak, Hayes, Richard D., Fazo, Joni, Mitros, Therese, Dirks, William, Hellsten, Uffe, Putnam, Nicholas , Rokhsar, Daniel S.
Vydáno 2012

Systematic determination of patterns of gene expression during Drosophila embryogenesis

Autor Tomancak, Pavel, Beaton, Amy, Weiszmann, Richard, Kwan, Elaine, Shu, ShengQiang, Lewis, Suzanna E, Richards, Stephen, Ashburner, Michael, Hartenstein, Volker, Celniker, Susan E, Rubin, Gerald M
Vydáno 2002

The Generic Genome Browser: A Building Block for a Model Organism System Database

Autor Stein, Lincoln D., Mungall, Christopher, Shu, ShengQiang, Caudy, Michael, Mangone, Marco, Day, Allen, Nickerson, Elizabeth, Stajich, Jason E., Harris, Todd W., Arva, Adrian, Lewis, Suzanna
Vydáno 2002

A chromosome‐scale reference genome of trifoliate orange (Poncirus trifoliata) provides insights into disease resistance, cold tolerance and genome evolution in Citrus

Autor Peng, Ze, Bredeson, Jessen V., Wu, Guohong A., Shu, Shengqiang, Rawat, Nidhi, Du, Dongliang, Parajuli, Saroj, Yu, Qibin, You, Qian, Rokhsar, Daniel S., Gmitter, Frederick G., Deng, Zhanao
Vydáno v Plant J (2020)

Identification, characterization, and gene expression analysis of nucleotide binding site (NB)-type resistance gene homologues in switchgrass

Autor Frazier, Taylor P., Palmer, Nathan A., Xie, Fuliang, Tobias, Christian M., Donze-Reiner, Teresa J., Bombarely, Aureliano, Childs, Kevin L., Shu, Shengqiang, Jenkins, Jerry W., Schmutz, Jeremy, Zhang, Baohong, Sarath, Gautam, Zhao, Bingyu
Vydáno v BMC Genomics (2016)

The Reference Genome of the Halophytic Plant Eutrema salsugineum

Autor Yang, Ruolin, Jarvis, David E., Chen, Hao, Beilstein, Mark A., Grimwood, Jane, Jenkins, Jerry, Shu, ShengQiang, Prochnik, Simon, Xin, Mingming, Ma, Chuang, Schmutz, Jeremy, Wing, Rod A., Mitchell-Olds, Thomas, Schumaker, Karen S., Wang, Xiangfeng
Vydáno 2013

The Peach v2.0 release: high-resolution linkage mapping and deep resequencing improve chromosome-scale assembly and contiguity

Autor Verde, Ignazio, Jenkins, Jerry, Dondini, Luca, Micali, Sabrina, Pagliarani, Giulia, Vendramin, Elisa, Paris, Roberta, Aramini, Valeria, Gazza, Laura, Rossini, Laura, Bassi, Daniele, Troggio, Michela, Shu, Shengqiang, Grimwood, Jane, Tartarini, Stefano, Dettori, Maria Teresa, Schmutz, Jeremy
Vydáno v BMC Genomics (2017)

Draft Nuclear Genome Sequence of the Liquid Hydrocarbon–Accumulating Green Microalga Botryococcus braunii Race B (Showa)

Autor Browne, Daniel R., Jenkins, Jerry, Schmutz, Jeremy, Shu, Shengqiang, Barry, Kerrie, Grimwood, Jane, Chiniquy, Jennifer, Sharma, Aditi, Niehaus, Thomas D., Weiss, Taylor L., Koppisch, Andrew T., Fox, David T., Dhungana, Suraj, Okada, Shigeru, Chappell, Joe, Devarenne, Timothy P.
Vydáno v Genome Announc (2017)

A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism

Autor Cooper, Elizabeth A., Brenton, Zachary W., Flinn, Barry S., Jenkins, Jerry, Shu, Shengqiang, Flowers, Dave, Luo, Feng, Wang, Yunsheng, Xia, Penny, Barry, Kerrie, Daum, Chris, Lipzen, Anna, Yoshinaga, Yuko, Schmutz, Jeremy, Saski, Christopher, Vermerris, Wilfred, Kresovich, Stephen
Vydáno v BMC Genomics (2019)

A willow sex chromosome reveals convergent evolution of complex palindromic repeats

Autor Zhou, Ran, Macaya-Sanz, David, Carlson, Craig H., Schmutz, Jeremy, Jenkins, Jerry W., Kudrna, David, Sharma, Aditi, Sandor, Laura, Shu, Shengqiang, Barry, Kerrie, Tuskan, Gerald A., Ma, Tao, Liu, Jianquan, Olson, Matthew, Smart, Lawrence B., DiFazio, Stephen P.
Vydáno v Genome Biol (2020)

The Aquilegia genome provides insight into adaptive radiation and reveals an extraordinarily polymorphic chromosome with a unique history

Autor Filiault, Danièle L, Ballerini, Evangeline S, Mandáková, Terezie, Aköz, Gökçe, Derieg, Nathan J, Schmutz, Jeremy, Jenkins, Jerry, Grimwood, Jane, Shu, Shengqiang, Hayes, Richard D, Hellsten, Uffe, Barry, Kerrie, Yan, Juying, Mihaltcheva, Sirma, Karafiátová, Miroslava, Nizhynska, Viktoria, Kramer, Elena M, Lysak, Martin A, Hodges, Scott A, Nordborg, Magnus
Vydáno v eLife (2018)

A genome resource for green millet Setaria viridis enables discovery of agronomically valuable loci

Autor Mamidi, Sujan, Healey, Adam, Huang, Pu, Grimwood, Jane, Jenkins, Jerry, Barry, Kerrie, Sreedasyam, Avinash, Shu, Shengqiang, Lovell, John T., Feldman, Maximilian, Wu, Jinxia, Yu, Yunqing, Chen, Cindy, Johnson, Jenifer, Sakakibara, Hitoshi, Kiba, Takatoshi, Sakurai, Tetsuya, Tavares, Rachel, Nusinow, Dmitri A., Baxter, Ivan, Schmutz, Jeremy, Brutnell, Thomas P., Kellogg, Elizabeth A.
Vydáno v Nat Biotechnol (2020)

The contributions from the progenitor genomes of the mesopolyploid Brassiceae are evolutionarily distinct but functionally compatible

Autor Hao, Yue, Mabry, Makenzie E., Edger, Patrick P., Freeling, Michael, Zheng, Chunfang, Jin, Lingling, VanBuren, Robert, Colle, Marivi, An, Hong, Abrahams, R. Shawn, Washburn, Jacob D., Qi, Xinshuai, Barry, Kerrie, Daum, Christopher, Shu, Shengqiang, Schmutz, Jeremy, Sankoff, David, Barker, Michael S., Lyons, Eric, Pires, J. Chris, Conant, Gavin C.
Vydáno v Genome Res (2021)

Genome sequence of the model rice variety KitaakeX

Autor Jain, Rashmi, Jenkins, Jerry, Shu, Shengqiang, Chern, Mawsheng, Martin, Joel A., Copetti, Dario, Duong, Phat Q., Pham, Nikki T., Kudrna, David A., Talag, Jayson, Schackwitz, Wendy S., Lipzen, Anna M., Dilworth, David, Bauer, Diane, Grimwood, Jane, Nelson, Catherine R., Xing, Feng, Xie, Weibo, Barry, Kerrie W., Wing, Rod A., Schmutz, Jeremy, Li, Guotian, Ronald, Pamela C.
Vydáno v BMC Genomics (2019)

A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa

Autor Hofmeister, Brigitte T., Denkena, Johanna, Colomé-Tatché, Maria, Shahryary, Yadollah, Hazarika, Rashmi, Grimwood, Jane, Mamidi, Sujan, Jenkins, Jerry, Grabowski, Paul P., Sreedasyam, Avinash, Shu, Shengqiang, Barry, Kerrie, Lail, Kathleen, Adam, Catherine, Lipzen, Anna, Sorek, Rotem, Kudrna, Dave, Talag, Jayson, Wing, Rod, Hall, David W., Jacobsen, Daniel, Tuskan, Gerald A., Schmutz, Jeremy, Johannes, Frank, Schmitz, Robert J.
Vydáno v Genome Biol (2020)