Meeting Review: Plant Bioinformatics at the NSF and NPGI (PAMGX Satellite) Meetings

по Bruskiewich, Richard
Опубликовано 2002

RiceGeneThresher: a web-based application for mining genes underlying QTL in rice genome

по Thongjuea, Supat, Ruanjaichon, Vinitchan, Bruskiewich, Richard, Vanavichit, Apichart
Опубликовано 2009

Identification of candidate genes for drought stress tolerance in rice by the integration of a genetic (QTL) map with the rice genome physical map

по Wang, Xu-sheng, Zhu, Jun, Mansueto, Locedie, Bruskiewich, Richard
Опубликовано 2005

Light-regulated and cell-specific methylation of the maize PEPC promoter

по Tolley, Ben J., Woodfield, Helen, Wanchana, Samart, Bruskiewich, Richard, Hibberd, Julian M.
Опубликовано 2012

The International Rice Information System. A Platform for Meta-Analysis of Rice Crop Data

по McLaren, Christopher Graham, Bruskiewich, Richard M., Portugal, Arllet M., Cosico, Alexander B.
Опубликовано 2005

Sequencing Multiple and Diverse Rice Varieties. Connecting Whole-Genome Variation with Phenotypes

по McNally, Kenneth L., Bruskiewich, Richard, Mackill, David, Buell, C. Robin, Leach, Jan E., Leung, Hei
Опубликовано 2006

Characterization of statistical features for plant microRNA prediction

по Thakur, Vivek, Wanchana, Samart, Xu, Mercedes, Bruskiewich, Richard, Quick, William Paul, Mosig, Axel, Zhu, Xin-Guang
Опубликовано 2011

Development of a novel data mining tool to find cis-elements in rice gene promoter regions

по Doi, Koji, Hosaka, Aeni, Nagata, Toshifumi, Satoh, Kouji, Suzuki, Kohji, Mauleon, Ramil, Mendoza, Michael J, Bruskiewich, Richard, Kikuchi, Shoshi
Опубликовано 2008

Multifunctional crop trait ontology for breeders' data: field book, annotation, data discovery and semantic enrichment of the literature

по Shrestha, Rosemary, Arnaud, Elizabeth, Mauleon, Ramil, Senger, Martin, Davenport, Guy F., Hancock, David, Morrison, Norman, Bruskiewich, Richard, McLaren, Graham
Опубликовано 2010

Knowledge Beacons: Web services for data harvesting of distributed biomedical knowledge

по Hannestad, Lance M., Dančík, Vlado, Godden, Meera, Suen, Imelda W., Huellas-Bruskiewicz, Kenneth C., Good, Benjamin M., Mungall, Christopher J., Bruskiewich, Richard M.
Опубликовано в: PLoS One (2021)

Transcriptional regulatory network triggered by oxidative signals configures the early response mechanisms of japonica rice to chilling stress

по Wijaya Edward, Mauleon Ramil, Xu Fuyu, Herath Venura, Mohanty Bijayalaxmi, Park Myoung, Yun Kil-Young, Bajic Vladimir B, Bruskiewich Richard, de los Reyes Benildo G
Опубликовано 2010-01-01

Transcriptional regulatory network triggered by oxidative signals configures the early response mechanisms of japonica rice to chilling stress

по Yun, Kil-Young, Park, Myoung Ryoul, Mohanty, Bijayalaxmi, Herath, Venura, Xu, Fuyu, Mauleon, Ramil, Wijaya, Edward, Bajic, Vladimir B, Bruskiewich, Richard, de los Reyes, Benildo G
Опубликовано 2010

The Generation Challenge Programme comparative plant stress-responsive gene catalogue

по Wanchana, Samart, Thongjuea, Supat, Ulat, Victor Jun, Anacleto, Mylah, Mauleon, Ramil, Conte, Matthieu, Rouard, Mathieu, Ruiz, Manuel, Krishnamurthy, Nandini, Sjolander, Kimmen, van Hintum, Theo, Bruskiewich, Richard M.
Опубликовано 2008

A SNP Resource for Human Chromosome 22: Extracting Dense Clusters of SNPs From the Genomic Sequence

по Dawson, Elisabeth, Chen, Yuan, Hunt, Sarah, Smink, Luc J., Hunt, Adrienne, Rice, Kate, Livingston, Simon, Bumpstead, Suzannah, Bruskiewich, Richard, Sham, Pak, Ganske, Rocky, Adams, Mark, Kawasaki, Kazuhiko, Shimizu, Nobuyoshi, Minoshima, Shinsei, Roe, Bruce, Bentley, David, Dunham, Ian
Опубликовано 2001

Genomewide SNP variation reveals relationships among landraces and modern varieties of rice

по McNally, Kenneth L., Childs, Kevin L., Bohnert, Regina, Davidson, Rebecca M., Zhao, Keyan, Ulat, Victor J., Zeller, Georg, Clark, Richard M., Hoen, Douglas R., Bureau, Thomas E., Stokowski, Renee, Ballinger, Dennis G., Frazer, Kelly A., Cox, David R., Padhukasahasram, Badri, Bustamante, Carlos D., Weigel, Detlef, Mackill, David J., Bruskiewich, Richard M., Rätsch, Gunnar, Buell, C. Robin, Leung, Hei, Leach, Jan E.
Опубликовано 2009

The Implicitome: A Resource for Rationalizing Gene-Disease Associations

по Hettne, Kristina M., Thompson, Mark, van Haagen, Herman H. H. B. M., van der Horst, Eelke, Kaliyaperumal, Rajaram, Mina, Eleni, Tatum, Zuotian, Laros, Jeroen F. J., van Mulligen, Erik M., Schuemie, Martijn, Aten, Emmelien, Li, Tong Shu, Bruskiewich, Richard, Good, Benjamin M., Su, Andrew I., Kors, Jan A., den Dunnen, Johan, van Ommen, Gert-Jan B., Roos, Marco, ‘t Hoen, Peter A.C., Mons, Barend, Schultes, Erik A.
Опубликовано в: PLoS One (2016)

Evaluating Methods for Isolating Total RNA and Predicting the Success of Sequencing Phylogenetically Diverse Plant Transcriptomes

по Johnson, Marc T. J., Carpenter, Eric J., Tian, Zhijian, Bruskiewich, Richard, Burris, Jason N., Carrigan, Charlotte T., Chase, Mark W., Clarke, Neil D., Covshoff, Sarah, dePamphilis, Claude W., Edger, Patrick P., Goh, Falicia, Graham, Sean, Greiner, Stephan, Hibberd, Julian M., Jordon-Thaden, Ingrid, Kutchan, Toni M., Leebens-Mack, James, Melkonian, Michael, Miles, Nicholas, Myburg, Henrietta, Patterson, Jordan, Pires, J. Chris, Ralph, Paula, Rolf, Megan, Sage, Rowan F., Soltis, Douglas, Soltis, Pamela, Stevenson, Dennis, Stewart, C. Neal, Surek, Barbara, Thomsen, Christina J. M., Villarreal, Juan Carlos, Wu, Xiaolei, Zhang, Yong, Deyholos, Michael K., Wong, Gane Ka-Shu
Опубликовано 2012

The Generation Challenge Programme Platform: Semantic Standards and Workbench for Crop Science

по Bruskiewich, Richard, Senger, Martin, Davenport, Guy, Ruiz, Manuel, Rouard, Mathieu, Hazekamp, Tom, Takeya, Masaru, Doi, Koji, Satoh, Kouji, Costa, Marcos, Simon, Reinhard, Balaji, Jayashree, Akintunde, Akinnola, Mauleon, Ramil, Wanchana, Samart, Shah, Trushar, Anacleto, Mylah, Portugal, Arllet, Ulat, Victor Jun, Thongjuea, Supat, Braak, Kyle, Ritter, Sebastian, Dereeper, Alexis, Skofic, Milko, Rojas, Edwin, Martins, Natalia, Pappas, Georgios, Alamban, Ryan, Almodiel, Roque, Barboza, Lord Hendrix, Detras, Jeffrey, Manansala, Kevin, Mendoza, Michael Jonathan, Morales, Jeffrey, Peralta, Barry, Valerio, Rowena, Zhang, Yi, Gregorio, Sergio, Hermocilla, Joseph, Echavez, Michael, Yap, Jan Michael, Farmer, Andrew, Schiltz, Gary, Lee, Jennifer, Casstevens, Terry, Jaiswal, Pankaj, Meintjes, Ayton, Wilkinson, Mark, Good, Benjamin, Wagner, James, Morris, Jane, Marshall, David, Collins, Anthony, Kikuchi, Shoshi, Metz, Thomas, McLaren, Graham, van Hintum, Theo
Опубликовано 2008

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*

по Katayama, Toshiaki, Arakawa, Kazuharu, Nakao, Mitsuteru, Ono, Keiichiro, Aoki-Kinoshita, Kiyoko F, Yamamoto, Yasunori, Yamaguchi, Atsuko, Kawashima, Shuichi, Chun, Hong-Woo, Aerts, Jan, Aranda, Bruno, Barboza, Lord Hendrix, Bonnal, Raoul JP, Bruskiewich, Richard, Bryne, Jan C, Fernández, José M, Funahashi, Akira, Gordon, Paul MK, Goto, Naohisa, Groscurth, Andreas, Gutteridge, Alex, Holland, Richard, Kano, Yoshinobu, Kawas, Edward A, Kerhornou, Arnaud, Kibukawa, Eri, Kinjo, Akira R, Kuhn, Michael, Lapp, Hilmar, Lehvaslaiho, Heikki, Nakamura, Hiroyuki, Nakamura, Yasukazu, Nishizawa, Tatsuya, Nobata, Chikashi, Noguchi, Tamotsu, Oinn, Thomas M, Okamoto, Shinobu, Owen, Stuart, Pafilis, Evangelos, Pocock, Matthew, Prins, Pjotr, Ranzinger, René, Reisinger, Florian, Salwinski, Lukasz, Schreiber, Mark, Senger, Martin, Shigemoto, Yasumasa, Standley, Daron M, Sugawara, Hideaki, Tashiro, Toshiyuki, Trelles, Oswaldo, Vos, Rutger A, Wilkinson, Mark D, York, William, Zmasek, Christian M, Asai, Kiyoshi, Takagi, Toshihisa
Опубликовано 2010

Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana

по Itoh, Takeshi, Tanaka, Tsuyoshi, Barrero, Roberto A., Yamasaki, Chisato, Fujii, Yasuyuki, Hilton, Phillip B., Antonio, Baltazar A., Aono, Hideo, Apweiler, Rolf, Bruskiewich, Richard, Bureau, Thomas, Burr, Frances, Costa de Oliveira, Antonio, Fuks, Galina, Habara, Takuya, Haberer, Georg, Han, Bin, Harada, Erimi, Hiraki, Aiko T., Hirochika, Hirohiko, Hoen, Douglas, Hokari, Hiroki, Hosokawa, Satomi, Hsing, Yue, Ikawa, Hiroshi, Ikeo, Kazuho, Imanishi, Tadashi, Ito, Yukiyo, Jaiswal, Pankaj, Kanno, Masako, Kawahara, Yoshihiro, Kawamura, Toshiyuki, Kawashima, Hiroaki, Khurana, Jitendra P., Kikuchi, Shoshi, Komatsu, Setsuko, Koyanagi, Kanako O., Kubooka, Hiromi, Lieberherr, Damien, Lin, Yao-Cheng, Lonsdale, David, Matsumoto, Takashi, Matsuya, Akihiro, McCombie, W. Richard, Messing, Joachim, Miyao, Akio, Mulder, Nicola, Nagamura, Yoshiaki, Nam, Jongmin, Namiki, Nobukazu, Numa, Hisataka, Nurimoto, Shin, O’Donovan, Claire, Ohyanagi, Hajime, Okido, Toshihisa, OOta, Satoshi, Osato, Naoki, Palmer, Lance E., Quetier, Francis, Raghuvanshi, Saurabh, Saichi, Naomi, Sakai, Hiroaki, Sakai, Yasumichi, Sakata, Katsumi, Sakurai, Tetsuya, Sato, Fumihiko, Sato, Yoshiharu, Schoof, Heiko, Seki, Motoaki, Shibata, Michie, Shimizu, Yuji, Shinozaki, Kazuo, Shinso, Yuji, Singh, Nagendra K., Smith-White, Brian, Takeda, Jun-ichi, Tanino, Motohiko, Tatusova, Tatiana, Thongjuea, Supat, Todokoro, Fusano, Tsugane, Mika, Tyagi, Akhilesh K., Vanavichit, Apichart, Wang, Aihui, Wing, Rod A., Yamaguchi, Kaori, Yamamoto, Mayu, Yamamoto, Naoyuki, Yu, Yeisoo, Zhang, Hao, Zhao, Qiang, Higo, Kenichi, Burr, Benjamin, Gojobori, Takashi, Sasaki, Takuji
Опубликовано 2007