TogoWS: integrated SOAP and REST APIs for interoperable bioinformatics Web services

av Katayama, Toshiaki, Nakao, Mitsuteru, Takagi, Toshihisa
Publicerad 2010

DBTBS: database of transcriptional regulation in Bacillus subtilis and its contribution to comparative genomics

av Makita, Yuko, Nakao, Mitsuteru, Ogasawara, Naotake, Nakai, Kenta
Publicerad 2004

BioRuby: bioinformatics software for the Ruby programming language

av Goto, Naohisa, Prins, Pjotr, Nakao, Mitsuteru, Bonnal, Raoul, Aerts, Jan, Katayama, Toshiaki
Publicerad 2010

Large-scale analysis of human alternative protein isoforms: pattern classification and correlation with subcellular localization signals

av Nakao, Mitsuteru, Barrero, Roberto A., Mukai, Yuri, Motono, Chie, Suwa, Makiko, Nakai, Kenta
Publicerad 2005

H-DBAS: Alternative splicing database of completely sequenced and manually annotated full-length cDNAs based on H-Invitational

av Takeda, Jun-ichi, Suzuki, Yutaka, Nakao, Mitsuteru, Kuroda, Tsuyoshi, Sugano, Sumio, Gojobori, Takashi, Imanishi, Tadashi
Publicerad 2007

CyanoBase: the cyanobacteria genome database update 2010

av Nakao, Mitsuteru, Okamoto, Shinobu, Kohara, Mitsuyo, Fujishiro, Tsunakazu, Fujisawa, Takatomo, Sato, Shusei, Tabata, Satoshi, Kaneko, Takakazu, Nakamura, Yasukazu
Publicerad 2010

Low conservation and species-specific evolution of alternative splicing in humans and mice: comparative genomics analysis using well-annotated full-length cDNAs

av Takeda, Jun-ichi, Suzuki, Yutaka, Sakate, Ryuichi, Sato, Yoshiharu, Seki, Masahide, Irie, Takuma, Takeuchi, Nono, Ueda, Takuya, Nakao, Mitsuteru, Sugano, Sumio, Gojobori, Takashi, Imanishi, Tadashi
Publicerad 2008

CyanoBase and RhizoBase: databases of manually curated annotations for cyanobacterial and rhizobial genomes

av Fujisawa, Takatomo, Okamoto, Shinobu, Katayama, Toshiaki, Nakao, Mitsuteru, Yoshimura, Hidehisa, Kajiya-Kanegae, Hiromi, Yamamoto, Sumiko, Yano, Chiyoko, Yanaka, Yuka, Maita, Hiroko, Kaneko, Takakazu, Tabata, Satoshi, Nakamura, Yasukazu
Publicerad 2014

Implementation of linked data in the life sciences at BioHackathon 2011

av Aoki-Kinoshita, Kiyoko F, Kinjo, Akira R, Morita, Mizuki, Igarashi, Yoshinobu, Chen, Yi-an, Shigemoto, Yasumasa, Fujisawa, Takatomo, Akune, Yukie, Katoda, Takeo, Kokubu, Anna, Mori, Takaaki, Nakao, Mitsuteru, Kawashima, Shuichi, Okamoto, Shinobu, Katayama, Toshiaki, Ogishima, Soichi
I publikationen J Biomed Semantics (2015)

Large-scale identification and characterization of alternative splicing variants of human gene transcripts using 56 419 completely sequenced and manually annotated full-length cDNA...

av Takeda, Jun-ichi, Suzuki, Yutaka, Nakao, Mitsuteru, Barrero, Roberto A., Koyanagi, Kanako O., Jin, Lihua, Motono, Chie, Hata, Hiroko, Isogai, Takao, Nagai, Keiichi, Otsuki, Tetsuji, Kuryshev, Vladimir, Shionyu, Masafumi, Yura, Kei, Go, Mitiko, Thierry-Mieg, Jean, Thierry-Mieg, Danielle, Wiemann, Stefan, Nomura, Nobuo, Sugano, Sumio, Gojobori, Takashi, Imanishi, Tadashi
Publicerad 2006

Genome Structure of the Legume, Lotus japonicus

av Sato, Shusei, Nakamura, Yasukazu, Kaneko, Takakazu, Asamizu, Erika, Kato, Tomohiko, Nakao, Mitsuteru, Sasamoto, Shigemi, Watanabe, Akiko, Ono, Akiko, Kawashima, Kumiko, Fujishiro, Tsunakazu, Katoh, Midori, Kohara, Mitsuyo, Kishida, Yoshie, Minami, Chiharu, Nakayama, Shinobu, Nakazaki, Naomi, Shimizu, Yoshimi, Shinpo, Sayaka, Takahashi, Chika, Wada, Tsuyuko, Yamada, Manabu, Ohmido, Nobuko, Hayashi, Makoto, Fukui, Kiichi, Baba, Tomoya, Nakamichi, Tomoko, Mori, Hirotada, Tabata, Satoshi
Publicerad 2008

Complete Genome Sequence of Bradyrhizobium sp. S23321: Insights into Symbiosis Evolution in Soil Oligotrophs

av Okubo, Takashi, Tsukui, Takahiro, Maita, Hiroko, Okamoto, Shinobu, Oshima, Kenshiro, Fujisawa, Takatomo, Saito, Akihiro, Futamata, Hiroyuki, Hattori, Reiko, Shimomura, Yumi, Haruta, Shin, Morimoto, Sho, Wang, Yong, Sakai, Yoriko, Hattori, Masahira, Aizawa, Shin-ichi, Nagashima, Kenji V. P., Masuda, Sachiko, Hattori, Tsutomu, Yamashita, Akifumi, Bao, Zhihua, Hayatsu, Masahito, Kajiya-Kanegae, Hiromi, Yoshinaga, Ikuo, Sakamoto, Kazunori, Toyota, Koki, Nakao, Mitsuteru, Kohara, Mitsuyo, Anda, Mizue, Niwa, Rieko, Jung-Hwan, Park, Sameshima-Saito, Reiko, Tokuda, Shin-ichi, Yamamoto, Sumiko, Yamamoto, Syuji, Yokoyama, Tadashi, Akutsu, Tomoko, Nakamura, Yasukazu, Nakahira-Yanaka, Yuka, Hoshino, Yuko Takada, Hirakawa, Hideki, Mitsui, Hisayuki, Terasawa, Kimihiro, Itakura, Manabu, Sato, Shusei, Ikeda-Ohtsubo, Wakako, Sakakura, Natsuko, Kaminuma, Eli, Minamisawa, Kiwamu
Publicerad 2012

The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications

av Katayama, Toshiaki, Wilkinson, Mark D, Vos, Rutger, Kawashima, Takeshi, Kawashima, Shuichi, Nakao, Mitsuteru, Yamamoto, Yasunori, Chun, Hong-Woo, Yamaguchi, Atsuko, Kawano, Shin, Aerts, Jan, Aoki-Kinoshita, Kiyoko F, Arakawa, Kazuharu, Aranda, Bruno, Bonnal, Raoul JP, Fernández, José M, Fujisawa, Takatomo, Gordon, Paul MK, Goto, Naohisa, Haider, Syed, Harris, Todd, Hatakeyama, Takashi, Ho, Isaac, Itoh, Masumi, Kasprzyk, Arek, Kido, Nobuhiro, Kim, Young-Joo, Kinjo, Akira R, Konishi, Fumikazu, Kovarskaya, Yulia, von Kuster, Greg, Labarga, Alberto, Limviphuvadh, Vachiranee, McCarthy, Luke, Nakamura, Yasukazu, Nam, Yunsun, Nishida, Kozo, Nishimura, Kunihiro, Nishizawa, Tatsuya, Ogishima, Soichi, Oinn, Tom, Okamoto, Shinobu, Okuda, Shujiro, Ono, Keiichiro, Oshita, Kazuki, Park, Keun-Joon, Putnam, Nicholas, Senger, Martin, Severin, Jessica, Shigemoto, Yasumasa, Sugawara, Hideaki, Taylor, James, Trelles, Oswaldo, Yamasaki, Chisato, Yamashita, Riu, Satoh, Noriyuki, Takagi, Toshihisa
Publicerad 2011

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*

av Katayama, Toshiaki, Arakawa, Kazuharu, Nakao, Mitsuteru, Ono, Keiichiro, Aoki-Kinoshita, Kiyoko F, Yamamoto, Yasunori, Yamaguchi, Atsuko, Kawashima, Shuichi, Chun, Hong-Woo, Aerts, Jan, Aranda, Bruno, Barboza, Lord Hendrix, Bonnal, Raoul JP, Bruskiewich, Richard, Bryne, Jan C, Fernández, José M, Funahashi, Akira, Gordon, Paul MK, Goto, Naohisa, Groscurth, Andreas, Gutteridge, Alex, Holland, Richard, Kano, Yoshinobu, Kawas, Edward A, Kerhornou, Arnaud, Kibukawa, Eri, Kinjo, Akira R, Kuhn, Michael, Lapp, Hilmar, Lehvaslaiho, Heikki, Nakamura, Hiroyuki, Nakamura, Yasukazu, Nishizawa, Tatsuya, Nobata, Chikashi, Noguchi, Tamotsu, Oinn, Thomas M, Okamoto, Shinobu, Owen, Stuart, Pafilis, Evangelos, Pocock, Matthew, Prins, Pjotr, Ranzinger, René, Reisinger, Florian, Salwinski, Lukasz, Schreiber, Mark, Senger, Martin, Shigemoto, Yasumasa, Standley, Daron M, Sugawara, Hideaki, Tashiro, Toshiyuki, Trelles, Oswaldo, Vos, Rutger A, Wilkinson, Mark D, York, William, Zmasek, Christian M, Asai, Kiyoshi, Takagi, Toshihisa
Publicerad 2010

The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies

av Katayama, Toshiaki, Wilkinson, Mark D, Micklem, Gos, Kawashima, Shuichi, Yamaguchi, Atsuko, Nakao, Mitsuteru, Yamamoto, Yasunori, Okamoto, Shinobu, Oouchida, Kenta, Chun, Hong-Woo, Aerts, Jan, Afzal, Hammad, Antezana, Erick, Arakawa, Kazuharu, Aranda, Bruno, Belleau, Francois, Bolleman, Jerven, Bonnal, Raoul JP, Chapman, Brad, Cock, Peter JA, Eriksson, Tore, Gordon, Paul MK, Goto, Naohisa, Hayashi, Kazuhiro, Horn, Heiko, Ishiwata, Ryosuke, Kaminuma, Eli, Kasprzyk, Arek, Kawaji, Hideya, Kido, Nobuhiro, Kim, Young Joo, Kinjo, Akira R, Konishi, Fumikazu, Kwon, Kyung-Hoon, Labarga, Alberto, Lamprecht, Anna-Lena, Lin, Yu, Lindenbaum, Pierre, McCarthy, Luke, Morita, Hideyuki, Murakami, Katsuhiko, Nagao, Koji, Nishida, Kozo, Nishimura, Kunihiro, Nishizawa, Tatsuya, Ogishima, Soichi, Ono, Keiichiro, Oshita, Kazuki, Park, Keun-Joon, Prins, Pjotr, Saito, Taro L, Samwald, Matthias, Satagopam, Venkata P, Shigemoto, Yasumasa, Smith, Richard, Splendiani, Andrea, Sugawara, Hideaki, Taylor, James, Vos, Rutger A, Withers, David, Yamasaki, Chisato, Zmasek, Christian M, Kawamoto, Shoko, Okubo, Kosaku, Asai, Kiyoshi, Takagi, Toshihisa
Publicerad 2013

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains

av Katayama, Toshiaki, Wilkinson, Mark D, Aoki-Kinoshita, Kiyoko F, Kawashima, Shuichi, Yamamoto, Yasunori, Yamaguchi, Atsuko, Okamoto, Shinobu, Kawano, Shin, Kim, Jin-Dong, Wang, Yue, Wu, Hongyan, Kano, Yoshinobu, Ono, Hiromasa, Bono, Hidemasa, Kocbek, Simon, Aerts, Jan, Akune, Yukie, Antezana, Erick, Arakawa, Kazuharu, Aranda, Bruno, Baran, Joachim, Bolleman, Jerven, Bonnal, Raoul JP, Buttigieg, Pier Luigi, Campbell, Matthew P, Chen, Yi-an, Chiba, Hirokazu, Cock, Peter JA, Cohen, K Bretonnel, Constantin, Alexandru, Duck, Geraint, Dumontier, Michel, Fujisawa, Takatomo, Fujiwara, Toyofumi, Goto, Naohisa, Hoehndorf, Robert, Igarashi, Yoshinobu, Itaya, Hidetoshi, Ito, Maori, Iwasaki, Wataru, Kalaš, Matúš, Katoda, Takeo, Kim, Taehong, Kokubu, Anna, Komiyama, Yusuke, Kotera, Masaaki, Laibe, Camille, Lapp, Hilmar, Lütteke, Thomas, Marshall, M Scott, Mori, Takaaki, Mori, Hiroshi, Morita, Mizuki, Murakami, Katsuhiko, Nakao, Mitsuteru, Narimatsu, Hisashi, Nishide, Hiroyo, Nishimura, Yosuke, Nystrom-Persson, Johan, Ogishima, Soichi, Okamura, Yasunobu, Okuda, Shujiro, Oshita, Kazuki, Packer, Nicki H, Prins, Pjotr, Ranzinger, Rene, Rocca-Serra, Philippe, Sansone, Susanna, Sawaki, Hiromichi, Shin, Sung-Ho, Splendiani, Andrea, Strozzi, Francesco, Tadaka, Shu, Toukach, Philip, Uchiyama, Ikuo, Umezaki, Masahito, Vos, Rutger, Whetzel, Patricia L, Yamada, Issaku, Yamasaki, Chisato, Yamashita, Riu, York, William S, Zmasek, Christian M, Kawamoto, Shoko, Takagi, Toshihisa
Publicerad 2014

Integrative Annotation of 21,037 Human Genes Validated by Full-Length cDNA Clones

av Imanishi, Tadashi, Itoh, Takeshi, Suzuki, Yutaka, O'Donovan, Claire, Fukuchi, Satoshi, Koyanagi, Kanako O, Barrero, Roberto A, Tamura, Takuro, Yamaguchi-Kabata, Yumi, Tanino, Motohiko, Yura, Kei, Miyazaki, Satoru, Ikeo, Kazuho, Homma, Keiichi, Kasprzyk, Arek, Nishikawa, Tetsuo, Hirakawa, Mika, Thierry-Mieg, Jean, Thierry-Mieg, Danielle, Ashurst, Jennifer, Jia, Libin, Nakao, Mitsuteru, Thomas, Michael A, Mulder, Nicola, Karavidopoulou, Youla, Jin, Lihua, Kim, Sangsoo, Yasuda, Tomohiro, Lenhard, Boris, Eveno, Eric, Suzuki, Yoshiyuki, Yamasaki, Chisato, Takeda, Jun-ichi, Gough, Craig, Hilton, Phillip, Fujii, Yasuyuki, Sakai, Hiroaki, Tanaka, Susumu, Amid, Clara, Bellgard, Matthew, Bonaldo, Maria de Fatima, Bono, Hidemasa, Bromberg, Susan K, Brookes, Anthony J, Bruford, Elspeth, Carninci, Piero, Chelala, Claude, Couillault, Christine, de Souza, Sandro J., Debily, Marie-Anne, Devignes, Marie-Dominique, Dubchak, Inna, Endo, Toshinori, Estreicher, Anne, Eyras, Eduardo, Fukami-Kobayashi, Kaoru, R. Gopinath, Gopal, Graudens, Esther, Hahn, Yoonsoo, Han, Michael, Han, Ze-Guang, Hanada, Kousuke, Hanaoka, Hideki, Harada, Erimi, Hashimoto, Katsuyuki, Hinz, Ursula, Hirai, Momoki, Hishiki, Teruyoshi, Hopkinson, Ian, Imbeaud, Sandrine, Inoko, Hidetoshi, Kanapin, Alexander, Kaneko, Yayoi, Kasukawa, Takeya, Kelso, Janet, Kersey, Paul, Kikuno, Reiko, Kimura, Kouichi, Korn, Bernhard, Kuryshev, Vladimir, Makalowska, Izabela, Makino, Takashi, Mano, Shuhei, Mariage-Samson, Regine, Mashima, Jun, Matsuda, Hideo, Mewes, Hans-Werner, Minoshima, Shinsei, Nagai, Keiichi, Nagasaki, Hideki, Nagata, Naoki, Nigam, Rajni, Ogasawara, Osamu, Ohara, Osamu, Ohtsubo, Masafumi, Okada, Norihiro, Okido, Toshihisa, Oota, Satoshi, Ota, Motonori, Ota, Toshio, Otsuki, Tetsuji, Piatier-Tonneau, Dominique, Poustka, Annemarie, Ren, Shuang-Xi, Saitou, Naruya, Sakai, Katsunaga, Sakamoto, Shigetaka, Sakate, Ryuichi, Schupp, Ingo, Servant, Florence, Sherry, Stephen, Shiba, Rie, Shimizu, Nobuyoshi, Shimoyama, Mary, Simpson, Andrew J, Soares, Bento, Steward, Charles, Suwa, Makiko, Suzuki, Mami, Takahashi, Aiko, Tamiya, Gen, Tanaka, Hiroshi, Taylor, Todd, Terwilliger, Joseph D, Unneberg, Per, Veeramachaneni, Vamsi, Watanabe, Shinya, Wilming, Laurens, Yasuda, Norikazu, Yoo, Hyang-Sook, Stodolsky, Marvin, Makalowski, Wojciech, Go, Mitiko, Nakai, Kenta, Takagi, Toshihisa, Kanehisa, Minoru, Sakaki, Yoshiyuki, Quackenbush, John, Okazaki, Yasushi, Hayashizaki, Yoshihide, Hide, Winston, Chakraborty, Ranajit, Nishikawa, Ken, Sugawara, Hideaki, Tateno, Yoshio, Chen, Zhu, Oishi, Michio, Tonellato, Peter, Apweiler, Rolf, Okubo, Kousaku, Wagner, Lukas, Wiemann, Stefan, Strausberg, Robert L, Isogai, Takao, Auffray, Charles, Nomura, Nobuo, Gojobori, Takashi, Sugano, Sumio
Publicerad 2004