Visualizing Sequence Similarity of Protein Families

por Veeramachaneni, Vamsi, Makałowski, Wojciech
Publicado 2004

DED: Database of Evolutionary Distances

por Veeramachaneni, Vamsi, Makałowski, Wojciech
Publicado 2005

Mastering seeds for genomic size nucleotide BLAST searches

por Gotea, Valer, Veeramachaneni, Vamsi, Makałowski, Wojciech
Publicado 2003

Mammalian Overlapping Genes: The Comparative Perspective

por Veeramachaneni, Vamsi, Makalowski, Wojciech, Galdzicki, Michal, Sood, Raman, Makalowska, Izabela
Publicado 2004

Next-generation sequencing-based method shows increased mutation detection sensitivity in an Indian retinoblastoma cohort

por Singh, Jaya, Mishra, Avshesh, Pandian, Arunachalam Jayamuruga, Mallipatna, Ashwin C., Khetan, Vikas, Sripriya, S., Kapoor, Suman, Agarwal, Smita, Sankaran, Satish, Katragadda, Shanmukh, Veeramachaneni, Vamsi, Hariharan, Ramesh, Subramanian, Kalyanasundaram, Mannan, Ashraf U.
Publicado en Mol Vis (2016)

Next-Generation Sequencing of Human Mitochondrial Reference Genomes Uncovers High Heteroplasmy Frequency

por Sosa, Maria Ximena, Sivakumar, I. K. Ashok, Maragh, Samantha, Veeramachaneni, Vamsi, Hariharan, Ramesh, Parulekar, Minothi, Fredrikson, Karin M., Harkins, Timothy T., Lin, Jeffrey, Feldman, Andrew B., Tata, Pramila, Ehret, Georg B., Chakravarti, Aravinda
Publicado 2012

Validation of whole genome sequencing from dried blood spots

por Agrawal, Pooja, Katragadda, Shanmukh, Hariharan, Arun K., Raghavendrachar, Vijayashree Gauribidanur, Agarwal, Arunika, Dayalu, Rashmi, Awasthy, Disha, Sharma, Sanjay C., Sivasamy, Yasodha Kannan, Lakshmana, P., Shanmugam, Ashwini, Veeramachaneni, Vamsi, Gupta, Vaijayanti, Vani, B. P., Subaiya, Lekha, Syamala, T. S., Hariharan, Ramesh, Chandru, Vijay, Bloom, David E.
Publicado en BMC Med Genomics (2021)

Analysis of solid tumor mutation profiles in liquid biopsy

por Balaji, Sai A., Shanmugam, Ashwini, Chougule, Anuradha, Sridharan, Srikant, Prabhash, Kumar, Arya, Anuradha, Chaubey, Aditya, Hariharan, Arun, Kolekar, Pandurang, Sen, Manimala, Ravichandran, Aarthi, Katragadda, Shanmukh, Sankaran, Satish, Bhargava, Saurabh, Kulkarni, Prashanth, Rao, Suchitra, Sunkavalli, Chinnababu, Banavali, Shripad, Joshi, Amit, Noronha, Vanita, Dutt, Amit, Bahadur, Urvashi, Hariharan, Ramesh, Veeramachaneni, Vamsi, Gupta, Vaijayanti
Publicado en Cancer Med (2018)

Ultra-sensitive detection of tumor-specific mutations in saliva of patients with oral cavity squamous cell carcinoma

por Shanmugam, Ashwini, Hariharan, Arun K, Hasina, Rifat, Nair, Jayalakshmi R, Katragadda, Shanmukh, Irusappan, Sivaraj, Ravichandran, Aarthi, Veeramachaneni, Vamsi, Bettadapura, Radhakrishna, Bhati, Muddasir, Ramaswamy, Veena, Rao, Vishal US, Bagadia, Ritvi K, Manjunath, Ashwini, NML, Manjunath, Solomon, Monica Charlotte, Maji, Shiuli, Bahadur, Urvashi, Bettegowda, Chetan, Papadopoulos, Nickolas, Lingen, Mark W., Hariharan, Ramesh, Gupta, Vaijayanti, Agrawal, Nishant, Izumchenko, Evgeny
Publicado en Cancer (2020)

StrandAdvantage test for early‐line and advanced‐stage treatment decisions in solid tumors

por Sen, Manimala, Katragadda, Shanmukh, Ravichandran, Aarthi, Deshpande, Gouri, Parulekar, Minothi, Nayanala, Swetha, Vittal, Vikram, Shen, Weiming, Phooi Nee Yong, Melanie, Jacob, Jemima, Parchuru, Sravanthi, Dhanuskodi, Kalpana, Eyring, Kenneth, Agrawal, Pooja, Agarwal, Smita, Shanmugam, Ashwini, Gupta, Satish, Vishwanath, Divya, Kumari, Kiran, Hariharan, Arun K., Balaji, Sai A., Liang, Qiaoling, Robolledo, Belen, Gauribidanur Raghavendrachar, Vijayashree, Oomer Farooque, Mohammed, Buresh, Cary J., Ramamoorthy, Preveen, Bahadur, Urvashi, Subramanian, Kalyanasundaram, Hariharan, Ramesh, Veeramachaneni, Vamsi, Sankaran, Satish, Gupta, Vaijayanti
Publicado en Cancer Med (2017)

Integrative Annotation of 21,037 Human Genes Validated by Full-Length cDNA Clones

por Imanishi, Tadashi, Itoh, Takeshi, Suzuki, Yutaka, O'Donovan, Claire, Fukuchi, Satoshi, Koyanagi, Kanako O, Barrero, Roberto A, Tamura, Takuro, Yamaguchi-Kabata, Yumi, Tanino, Motohiko, Yura, Kei, Miyazaki, Satoru, Ikeo, Kazuho, Homma, Keiichi, Kasprzyk, Arek, Nishikawa, Tetsuo, Hirakawa, Mika, Thierry-Mieg, Jean, Thierry-Mieg, Danielle, Ashurst, Jennifer, Jia, Libin, Nakao, Mitsuteru, Thomas, Michael A, Mulder, Nicola, Karavidopoulou, Youla, Jin, Lihua, Kim, Sangsoo, Yasuda, Tomohiro, Lenhard, Boris, Eveno, Eric, Suzuki, Yoshiyuki, Yamasaki, Chisato, Takeda, Jun-ichi, Gough, Craig, Hilton, Phillip, Fujii, Yasuyuki, Sakai, Hiroaki, Tanaka, Susumu, Amid, Clara, Bellgard, Matthew, Bonaldo, Maria de Fatima, Bono, Hidemasa, Bromberg, Susan K, Brookes, Anthony J, Bruford, Elspeth, Carninci, Piero, Chelala, Claude, Couillault, Christine, de Souza, Sandro J., Debily, Marie-Anne, Devignes, Marie-Dominique, Dubchak, Inna, Endo, Toshinori, Estreicher, Anne, Eyras, Eduardo, Fukami-Kobayashi, Kaoru, R. Gopinath, Gopal, Graudens, Esther, Hahn, Yoonsoo, Han, Michael, Han, Ze-Guang, Hanada, Kousuke, Hanaoka, Hideki, Harada, Erimi, Hashimoto, Katsuyuki, Hinz, Ursula, Hirai, Momoki, Hishiki, Teruyoshi, Hopkinson, Ian, Imbeaud, Sandrine, Inoko, Hidetoshi, Kanapin, Alexander, Kaneko, Yayoi, Kasukawa, Takeya, Kelso, Janet, Kersey, Paul, Kikuno, Reiko, Kimura, Kouichi, Korn, Bernhard, Kuryshev, Vladimir, Makalowska, Izabela, Makino, Takashi, Mano, Shuhei, Mariage-Samson, Regine, Mashima, Jun, Matsuda, Hideo, Mewes, Hans-Werner, Minoshima, Shinsei, Nagai, Keiichi, Nagasaki, Hideki, Nagata, Naoki, Nigam, Rajni, Ogasawara, Osamu, Ohara, Osamu, Ohtsubo, Masafumi, Okada, Norihiro, Okido, Toshihisa, Oota, Satoshi, Ota, Motonori, Ota, Toshio, Otsuki, Tetsuji, Piatier-Tonneau, Dominique, Poustka, Annemarie, Ren, Shuang-Xi, Saitou, Naruya, Sakai, Katsunaga, Sakamoto, Shigetaka, Sakate, Ryuichi, Schupp, Ingo, Servant, Florence, Sherry, Stephen, Shiba, Rie, Shimizu, Nobuyoshi, Shimoyama, Mary, Simpson, Andrew J, Soares, Bento, Steward, Charles, Suwa, Makiko, Suzuki, Mami, Takahashi, Aiko, Tamiya, Gen, Tanaka, Hiroshi, Taylor, Todd, Terwilliger, Joseph D, Unneberg, Per, Veeramachaneni, Vamsi, Watanabe, Shinya, Wilming, Laurens, Yasuda, Norikazu, Yoo, Hyang-Sook, Stodolsky, Marvin, Makalowski, Wojciech, Go, Mitiko, Nakai, Kenta, Takagi, Toshihisa, Kanehisa, Minoru, Sakaki, Yoshiyuki, Quackenbush, John, Okazaki, Yasushi, Hayashizaki, Yoshihide, Hide, Winston, Chakraborty, Ranajit, Nishikawa, Ken, Sugawara, Hideaki, Tateno, Yoshio, Chen, Zhu, Oishi, Michio, Tonellato, Peter, Apweiler, Rolf, Okubo, Kousaku, Wagner, Lukas, Wiemann, Stefan, Strausberg, Robert L, Isogai, Takao, Auffray, Charles, Nomura, Nobuo, Gojobori, Takashi, Sugano, Sumio
Publicado 2004

An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge

por Brownstein, Catherine A, Beggs, Alan H, Homer, Nils, Merriman, Barry, Yu, Timothy W, Flannery, Katherine C, DeChene, Elizabeth T, Towne, Meghan C, Savage, Sarah K, Price, Emily N, Holm, Ingrid A, Luquette, Lovelace J, Lyon, Elaine, Majzoub, Joseph, Neupert, Peter, McCallie Jr, David, Szolovits, Peter, Willard, Huntington F, Mendelsohn, Nancy J, Temme, Renee, Finkel, Richard S, Yum, Sabrina W, Medne, Livija, Sunyaev, Shamil R, Adzhubey, Ivan, Cassa, Christopher A, de Bakker, Paul IW, Duzkale, Hatice, Dworzyński, Piotr, Fairbrother, William, Francioli, Laurent, Funke, Birgit H, Giovanni, Monica A, Handsaker, Robert E, Lage, Kasper, Lebo, Matthew S, Lek, Monkol, Leshchiner, Ignaty, MacArthur, Daniel G, McLaughlin, Heather M, Murray, Michael F, Pers, Tune H, Polak, Paz P, Raychaudhuri, Soumya, Rehm, Heidi L, Soemedi, Rachel, Stitziel, Nathan O, Vestecka, Sara, Supper, Jochen, Gugenmus, Claudia, Klocke, Bernward, Hahn, Alexander, Schubach, Max, Menzel, Mortiz, Biskup, Saskia, Freisinger, Peter, Deng, Mario, Braun, Martin, Perner, Sven, Smith, Richard JH, Andorf, Janeen L, Huang, Jian, Ryckman, Kelli, Sheffield, Val C, Stone, Edwin M, Bair, Thomas, Black-Ziegelbein, E Ann, Braun, Terry A, Darbro, Benjamin, DeLuca, Adam P, Kolbe, Diana L, Scheetz, Todd E, Shearer, Aiden E, Sompallae, Rama, Wang, Kai, Bassuk, Alexander G, Edens, Erik, Mathews, Katherine, Moore, Steven A, Shchelochkov, Oleg A, Trapane, Pamela, Bossler, Aaron, Campbell, Colleen A, Heusel, Jonathan W, Kwitek, Anne, Maga, Tara, Panzer, Karin, Wassink, Thomas, Van Daele, Douglas, Azaiez, Hela, Booth, Kevin, Meyer, Nic, Segal, Michael M, Williams, Marc S, Tromp, Gerard, White, Peter, Corsmeier, Donald, Fitzgerald-Butt, Sara, Herman, Gail, Lamb-Thrush, Devon, McBride, Kim L, Newsom, David, Pierson, Christopher R, Rakowsky, Alexander T, Maver, Aleš, Lovrečić, Luca, Palandačić, Anja, Peterlin, Borut, Torkamani, Ali, Wedell, Anna, Huss, Mikael, Alexeyenko, Andrey, Lindvall, Jessica M, Magnusson, Måns, Nilsson, Daniel, Stranneheim, Henrik, Taylan, Fulya, Gilissen, Christian, Hoischen, Alexander, van Bon, Bregje, Yntema, Helger, Nelen, Marcel, Zhang, Weidong, Sager, Jason, Zhang, Lu, Blair, Kathryn, Kural, Deniz, Cariaso, Michael, Lennon, Greg G, Javed, Asif, Agrawal, Saloni, Ng, Pauline C, Sandhu, Komal S, Krishna, Shuba, Veeramachaneni, Vamsi, Isakov, Ofer, Halperin, Eran, Friedman, Eitan, Shomron, Noam, Glusman, Gustavo, Roach, Jared C, Caballero, Juan, Cox, Hannah C, Mauldin, Denise, Ament, Seth A, Rowen, Lee, Richards, Daniel R, Lucas, F Anthony San, Gonzalez-Garay, Manuel L, Caskey, C Thomas, Bai, Yu, Huang, Ying, Fang, Fang, Zhang, Yan, Wang, Zhengyuan, Barrera, Jorge, Garcia-Lobo, Juan M, González-Lamuño, Domingo, Llorca, Javier, Rodriguez, Maria C, Varela, Ignacio, Reese, Martin G, De La Vega, Francisco M, Kiruluta, Edward, Cargill, Michele, Hart, Reece K, Sorenson, Jon M, Lyon, Gholson J, Stevenson, David A, Bray, Bruce E, Moore, Barry M, Eilbeck, Karen, Yandell, Mark, Zhao, Hongyu, Hou, Lin, Chen, Xiaowei, Yan, Xiting, Chen, Mengjie, Li, Cong, Yang, Can, Gunel, Murat, Li, Peining, Kong, Yong, Alexander, Austin C, Albertyn, Zayed I, Boycott, Kym M, Bulman, Dennis E, Gordon, Paul MK, Innes, A Micheil, Knoppers, Bartha M, Majewski, Jacek, Marshall, Christian R, Parboosingh, Jillian S, Sawyer, Sarah L, Samuels, Mark E, Schwartzentruber, Jeremy, Kohane, Isaac S, Margulies, David M
Publicado 2014