Improvement of domain-level ortholog clustering by optimizing domain-specific sum-of-pairs score

af Chiba, Hirokazu, Uchiyama, Ikuo
Udgivet 2014

SPANG: a SPARQL client supporting generation and reuse of queries for distributed RDF databases

af Chiba, Hirokazu, Uchiyama, Ikuo
Udgivet i BMC Bioinformatics (2017)

Construction of an Ortholog Database Using the Semantic Web Technology for Integrative Analysis of Genomic Data

af Chiba, Hirokazu, Nishide, Hiroyo, Uchiyama, Ikuo
Udgivet i PLoS One (2015)

Weak correlation between sequence conservation in promoter regions and in protein-coding regions of human-mouse orthologous gene pairs

af Chiba, Hirokazu, Yamashita, Riu, Kinoshita, Kengo, Nakai, Kenta
Udgivet 2008

MBGD update 2013: the microbial genome database for exploring the diversity of microbial world

af Uchiyama, Ikuo, Mihara, Motohiro, Nishide, Hiroyo, Chiba, Hirokazu
Udgivet 2013

MBGD update 2015: microbial genome database for flexible ortholog analysis utilizing a diverse set of genomic data

af Uchiyama, Ikuo, Mihara, Motohiro, Nishide, Hiroyo, Chiba, Hirokazu
Udgivet i Nucleic Acids Res (2014)

MBGD update 2018: microbial genome database based on hierarchical orthology relations covering closely related and distantly related comparisons

af Uchiyama, Ikuo, Mihara, Motohiro, Nishide, Hiroyo, Chiba, Hirokazu, Kato, Masaki
Udgivet i Nucleic Acids Res (2019)

PeakRegressor Identifies Composite Sequence Motifs Responsible for STAT1 Binding Sites and Their Potential rSNPs

af Pessiot, Jean-François, Chiba, Hirokazu, Hyakkoku, Hiroto, Taniguchi, Takeaki, Fujibuchi, Wataru
Udgivet 2010

The Orthology Ontology: development and applications

af Fernández-Breis, Jesualdo Tomás, Chiba, Hirokazu, Legaz-García, María del Carmen, Uchiyama, Ikuo
Udgivet i J Biomed Semantics (2016)

TogoGenome/TogoStanza: modularized Semantic Web genome database

af Katayama, Toshiaki, Kawashima, Shuichi, Okamoto, Shinobu, Moriya, Yuki, Chiba, Hirokazu, Naito, Yuki, Fujisawa, Takatomo, Mori, Hiroshi, Takagi, Toshihisa
Udgivet i Database (Oxford) (2019)

CELLPEDIA: a repository for human cell information for cell studies and differentiation analyses

af Hatano, Akiko, Chiba, Hirokazu, Moesa, Harry Amri, Taniguchi, Takeaki, Nagaie, Satoshi, Yamanegi, Koji, Takai-Igarashi, Takako, Tanaka, Hiroshi, Fujibuchi, Wataru
Udgivet 2011

BioHackathon 2015: Semantics of data for life sciences and reproducible research

af Vos, Rutger A., Katayama, Toshiaki, Mishima, Hiroyuki, Kawano, Shin, Kawashima, Shuichi, Kim, Jin-Dong, Moriya, Yuki, Tokimatsu, Toshiaki, Yamaguchi, Atsuko, Yamamoto, Yasunori, Wu, Hongyan, Amstutz, Peter, Antezana, Erick, Aoki, Nobuyuki P., Arakawa, Kazuharu, Bolleman, Jerven T., Bolton, Evan, Bonnal, Raoul J. P., Bono, Hidemasa, Burger, Kees, Chiba, Hirokazu, Cohen, Kevin B., Deutsch, Eric W., Fernández-Breis, Jesualdo T., Fu, Gang, Fujisawa, Takatomo, Fukushima, Atsushi, García, Alexander, Goto, Naohisa, Groza, Tudor, Hercus, Colin, Hoehndorf, Robert, Itaya, Kotone, Juty, Nick, Kawashima, Takeshi, Kim, Jee-Hyub, Kinjo, Akira R., Kotera, Masaaki, Kozaki, Kouji, Kumagai, Sadahiro, Kushida, Tatsuya, Lütteke, Thomas, Matsubara, Masaaki, Miyamoto, Joe, Mohsen, Attayeb, Mori, Hiroshi, Naito, Yuki, Nakazato, Takeru, Nguyen-Xuan, Jeremy, Nishida, Kozo, Nishida, Naoki, Nishide, Hiroyo, Ogishima, Soichi, Ohta, Tazro, Okuda, Shujiro, Paten, Benedict, Perret, Jean-Luc, Prathipati, Philip, Prins, Pjotr, Queralt-Rosinach, Núria, Shinmachi, Daisuke, Suzuki, Shinya, Tabata, Tsuyosi, Takatsuki, Terue, Taylor, Kieron, Thompson, Mark, Uchiyama, Ikuo, Vieira, Bruno, Wei, Chih-Hsuan, Wilkinson, Mark, Yamada, Issaku, Yamanaka, Ryota, Yoshitake, Kazutoshi, Yoshizawa, Akiyasu C., Dumontier, Michel, Kosaki, Kenjiro, Takagi, Toshihisa
Udgivet i F1000Res (2020)

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains

af Katayama, Toshiaki, Wilkinson, Mark D, Aoki-Kinoshita, Kiyoko F, Kawashima, Shuichi, Yamamoto, Yasunori, Yamaguchi, Atsuko, Okamoto, Shinobu, Kawano, Shin, Kim, Jin-Dong, Wang, Yue, Wu, Hongyan, Kano, Yoshinobu, Ono, Hiromasa, Bono, Hidemasa, Kocbek, Simon, Aerts, Jan, Akune, Yukie, Antezana, Erick, Arakawa, Kazuharu, Aranda, Bruno, Baran, Joachim, Bolleman, Jerven, Bonnal, Raoul JP, Buttigieg, Pier Luigi, Campbell, Matthew P, Chen, Yi-an, Chiba, Hirokazu, Cock, Peter JA, Cohen, K Bretonnel, Constantin, Alexandru, Duck, Geraint, Dumontier, Michel, Fujisawa, Takatomo, Fujiwara, Toyofumi, Goto, Naohisa, Hoehndorf, Robert, Igarashi, Yoshinobu, Itaya, Hidetoshi, Ito, Maori, Iwasaki, Wataru, Kalaš, Matúš, Katoda, Takeo, Kim, Taehong, Kokubu, Anna, Komiyama, Yusuke, Kotera, Masaaki, Laibe, Camille, Lapp, Hilmar, Lütteke, Thomas, Marshall, M Scott, Mori, Takaaki, Mori, Hiroshi, Morita, Mizuki, Murakami, Katsuhiko, Nakao, Mitsuteru, Narimatsu, Hisashi, Nishide, Hiroyo, Nishimura, Yosuke, Nystrom-Persson, Johan, Ogishima, Soichi, Okamura, Yasunobu, Okuda, Shujiro, Oshita, Kazuki, Packer, Nicki H, Prins, Pjotr, Ranzinger, Rene, Rocca-Serra, Philippe, Sansone, Susanna, Sawaki, Hiromichi, Shin, Sung-Ho, Splendiani, Andrea, Strozzi, Francesco, Tadaka, Shu, Toukach, Philip, Uchiyama, Ikuo, Umezaki, Masahito, Vos, Rutger, Whetzel, Patricia L, Yamada, Issaku, Yamasaki, Chisato, Yamashita, Riu, York, William S, Zmasek, Christian M, Kawamoto, Shoko, Takagi, Toshihisa
Udgivet 2014