The HTS barcode checker pipeline, a tool for automated detection of illegally traded species from high-throughput sequencing data

Por Lammers, Youri, Peelen, Tamara, Vos, Rutger A, Gravendeel, Barbara
Publicado em 2014

Evolution of embryonic developmental period in the marine bird families Alcidae and Spheniscidae: roles for nutrition and predation?

Por Hipfner, J Mark, Gorman, Kristen B, Vos, Rutger A, Joy, Jeffrey B
Publicado em 2010

BIO::Phylo-phyloinformatic analysis using perl

Por Vos, Rutger A, Caravas, Jason, Hartmann, Klaas, Jensen, Mark A, Miller, Chase
Publicado em 2011

Evolutionary dynamics of mycorrhizal symbiosis in land plant diversification

Por Feijen, Frida A. A., Vos, Rutger A., Nuytinck, Jorinde, Merckx, Vincent S. F. T.
Publicado no Sci Rep (2018)

Advancing data reuse in phyloinformatics using an ontology-driven Semantic Web approach

Por Panahiazar, Maryam, Sheth, Amit P, Ranabahu, Ajith, Vos, Rutger A, Leebens-Mack, Jim
Publicado em 2013

Organic matter reduces the amount of detectable environmental DNA in freshwater

Por van Bochove, Kees, Bakker, Freek T., Beentjes, Kevin K., Hemerik, Lia, Vos, Rutger A., Gravendeel, Barbara
Publicado no Ecol Evol (2020)

phylotaR: An Automated Pipeline for Retrieving Orthologous DNA Sequences from GenBank in R

Por Bennett, Dominic J., Hettling, Hannes, Silvestro, Daniele, Zizka, Alexander, Bacon, Christine D., Faurby, Søren, Vos, Rutger A., Antonelli, Alexandre
Publicado no Life (Basel) (2018)

Sharing and re-use of phylogenetic trees (and associated data) to facilitate synthesis

Por Stoltzfus, Arlin, O'Meara, Brian, Whitacre, Jamie, Mounce, Ross, Gillespie, Emily L, Kumar, Sudhir, Rosauer, Dan F, Vos, Rutger A
Publicado em 2012

NeXML: Rich, Extensible, and Verifiable Representation of Comparative Data and Metadata

Por Vos, Rutger A., Balhoff, James P., Caravas, Jason A., Holder, Mark T., Lapp, Hilmar, Maddison, Wayne P., Midford, Peter E., Priyam, Anurag, Sukumaran, Jeet, Xia, Xuhua, Stoltzfus, Arlin
Publicado em 2012

Scalariform-to-simple transition in vessel perforation plates triggered by differences in climate during the evolution of Adoxaceae

Por Lens, Frederic, Vos, Rutger A., Charrier, Guillaume, van der Niet, Timo, Merckx, Vincent, Baas, Pieter, Aguirre Gutierrez, Jesus, Jacobs, Bart, Chacon Dória, Larissa, Smets, Erik, Delzon, Sylvain, Janssens, Steven B.
Publicado no Ann Bot (2016)

The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants

Por Hoehndorf, Robert, Alshahrani, Mona, Gkoutos, Georgios V., Gosline, George, Groom, Quentin, Hamann, Thomas, Kattge, Jens, de Oliveira, Sylvia Mota, Schmidt, Marco, Sierra, Soraya, Smets, Erik, Vos, Rutger A., Weiland, Claus
Publicado no J Biomed Semantics (2016)

Toward a Self-Updating Platform for Estimating Rates of Speciation and Migration, Ages, and Relationships of Taxa

Por Antonelli, Alexandre, Hettling, Hannes, Condamine, Fabien L., Vos, Karin, Nilsson, R. Henrik, Sanderson, Michael J., Sauquet, Hervé, Scharn, Ruud, Silvestro, Daniele, Töpel, Mats, Bacon, Christine D., Oxelman, Bengt, Vos, Rutger A.
Publicado no Syst Biol (2017)

Exploring the evolutionary origin of floral organs of Erycina pusilla, an emerging orchid model system

Por Dirks-Mulder, Anita, Butôt, Roland, van Schaik, Peter, Wijnands, Jan Willem P. M., van den Berg, Roel, Krol, Louie, Doebar, Sadhana, van Kooperen, Kelly, de Boer, Hugo, Kramer, Elena M., Smets, Erik F., Vos, Rutger A., Vrijdaghs, Alexander, Gravendeel, Barbara
Publicado no BMC Evol Biol (2017)

Incorporation of an invasive plant into a native insect herbivore food web

Por Schilthuizen, Menno, Santos Pimenta, Lúcia P., Lammers, Youri, Steenbergen, Peter J., Flohil, Marco, Beveridge, Nils G.P., van Duijn, Pieter T., Meulblok, Marjolein M., Sosef, Nils, van de Ven, Robin, Werring, Ralf, Beentjes, Kevin K., Meijer, Kim, Vos, Rutger A., Vrieling, Klaas, Gravendeel, Barbara, Choi, Young, Verpoorte, Robert, Smit, Chris, Beukeboom, Leo W.
Publicado no PeerJ (2016)

Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera

Por Mutanen, Marko, Kivelä, Sami M., Vos, Rutger A., Doorenweerd, Camiel, Ratnasingham, Sujeevan, Hausmann, Axel, Huemer, Peter, Dincă, Vlad, van Nieukerken, Erik J., Lopez-Vaamonde, Carlos, Vila, Roger, Aarvik, Leif, Decaëns, Thibaud, Efetov, Konstantin A., Hebert, Paul D. N., Johnsen, Arild, Karsholt, Ole, Pentinsaari, Mikko, Rougerie, Rodolphe, Segerer, Andreas, Tarmann, Gerhard, Zahiri, Reza, Godfray, H. Charles J.
Publicado no Syst Biol (2016)

The 2006 NESCent Phyloinformatics Hackathon: A Field Report

Por Lapp, Hilmar, Bala, Sendu, Balhoff, James P., Bouck, Amy, Goto, Naohisa, Holder, Mark, Holland, Richard, Holloway, Alisha, Katayama, Toshiaki, Lewis, Paul O., Mackey, Aaron J., Osborne, Brian I., Piel, William H., Kosakovsky Pond, Sergei L., Poon, Art F.Y., Qiu, Wei-Gang, Stajich, Jason E., Stoltzfus, Arlin, Thierer, Tobias, Vilella, Albert J., Vos, Rutger A., Zmasek, Christian M., Zwickl, Derrick J., Vision, Todd J.
Publicado em 2007

The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system

Por Vonk, Freek J., Casewell, Nicholas R., Henkel, Christiaan V., Heimberg, Alysha M., Jansen, Hans J., McCleary, Ryan J. R., Kerkkamp, Harald M. E., Vos, Rutger A., Guerreiro, Isabel, Calvete, Juan J., Wüster, Wolfgang, Woods, Anthony E., Logan, Jessica M., Harrison, Robert A., Castoe, Todd A., de Koning, A. P. Jason, Pollock, David D., Yandell, Mark, Calderon, Diego, Renjifo, Camila, Currier, Rachel B., Salgado, David, Pla, Davinia, Sanz, Libia, Hyder, Asad S., Ribeiro, José M. C., Arntzen, Jan W., van den Thillart, Guido E. E. J. M., Boetzer, Marten, Pirovano, Walter, Dirks, Ron P., Spaink, Herman P., Duboule, Denis, McGlinn, Edwina, Kini, R. Manjunatha, Richardson, Michael K.
Publicado em 2013

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*

Por Katayama, Toshiaki, Arakawa, Kazuharu, Nakao, Mitsuteru, Ono, Keiichiro, Aoki-Kinoshita, Kiyoko F, Yamamoto, Yasunori, Yamaguchi, Atsuko, Kawashima, Shuichi, Chun, Hong-Woo, Aerts, Jan, Aranda, Bruno, Barboza, Lord Hendrix, Bonnal, Raoul JP, Bruskiewich, Richard, Bryne, Jan C, Fernández, José M, Funahashi, Akira, Gordon, Paul MK, Goto, Naohisa, Groscurth, Andreas, Gutteridge, Alex, Holland, Richard, Kano, Yoshinobu, Kawas, Edward A, Kerhornou, Arnaud, Kibukawa, Eri, Kinjo, Akira R, Kuhn, Michael, Lapp, Hilmar, Lehvaslaiho, Heikki, Nakamura, Hiroyuki, Nakamura, Yasukazu, Nishizawa, Tatsuya, Nobata, Chikashi, Noguchi, Tamotsu, Oinn, Thomas M, Okamoto, Shinobu, Owen, Stuart, Pafilis, Evangelos, Pocock, Matthew, Prins, Pjotr, Ranzinger, René, Reisinger, Florian, Salwinski, Lukasz, Schreiber, Mark, Senger, Martin, Shigemoto, Yasumasa, Standley, Daron M, Sugawara, Hideaki, Tashiro, Toshiyuki, Trelles, Oswaldo, Vos, Rutger A, Wilkinson, Mark D, York, William, Zmasek, Christian M, Asai, Kiyoshi, Takagi, Toshihisa
Publicado em 2010

The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies

Por Katayama, Toshiaki, Wilkinson, Mark D, Micklem, Gos, Kawashima, Shuichi, Yamaguchi, Atsuko, Nakao, Mitsuteru, Yamamoto, Yasunori, Okamoto, Shinobu, Oouchida, Kenta, Chun, Hong-Woo, Aerts, Jan, Afzal, Hammad, Antezana, Erick, Arakawa, Kazuharu, Aranda, Bruno, Belleau, Francois, Bolleman, Jerven, Bonnal, Raoul JP, Chapman, Brad, Cock, Peter JA, Eriksson, Tore, Gordon, Paul MK, Goto, Naohisa, Hayashi, Kazuhiro, Horn, Heiko, Ishiwata, Ryosuke, Kaminuma, Eli, Kasprzyk, Arek, Kawaji, Hideya, Kido, Nobuhiro, Kim, Young Joo, Kinjo, Akira R, Konishi, Fumikazu, Kwon, Kyung-Hoon, Labarga, Alberto, Lamprecht, Anna-Lena, Lin, Yu, Lindenbaum, Pierre, McCarthy, Luke, Morita, Hideyuki, Murakami, Katsuhiko, Nagao, Koji, Nishida, Kozo, Nishimura, Kunihiro, Nishizawa, Tatsuya, Ogishima, Soichi, Ono, Keiichiro, Oshita, Kazuki, Park, Keun-Joon, Prins, Pjotr, Saito, Taro L, Samwald, Matthias, Satagopam, Venkata P, Shigemoto, Yasumasa, Smith, Richard, Splendiani, Andrea, Sugawara, Hideaki, Taylor, James, Vos, Rutger A, Withers, David, Yamasaki, Chisato, Zmasek, Christian M, Kawamoto, Shoko, Okubo, Kosaku, Asai, Kiyoshi, Takagi, Toshihisa
Publicado em 2013

BioHackathon 2015: Semantics of data for life sciences and reproducible research

Por Vos, Rutger A., Katayama, Toshiaki, Mishima, Hiroyuki, Kawano, Shin, Kawashima, Shuichi, Kim, Jin-Dong, Moriya, Yuki, Tokimatsu, Toshiaki, Yamaguchi, Atsuko, Yamamoto, Yasunori, Wu, Hongyan, Amstutz, Peter, Antezana, Erick, Aoki, Nobuyuki P., Arakawa, Kazuharu, Bolleman, Jerven T., Bolton, Evan, Bonnal, Raoul J. P., Bono, Hidemasa, Burger, Kees, Chiba, Hirokazu, Cohen, Kevin B., Deutsch, Eric W., Fernández-Breis, Jesualdo T., Fu, Gang, Fujisawa, Takatomo, Fukushima, Atsushi, García, Alexander, Goto, Naohisa, Groza, Tudor, Hercus, Colin, Hoehndorf, Robert, Itaya, Kotone, Juty, Nick, Kawashima, Takeshi, Kim, Jee-Hyub, Kinjo, Akira R., Kotera, Masaaki, Kozaki, Kouji, Kumagai, Sadahiro, Kushida, Tatsuya, Lütteke, Thomas, Matsubara, Masaaki, Miyamoto, Joe, Mohsen, Attayeb, Mori, Hiroshi, Naito, Yuki, Nakazato, Takeru, Nguyen-Xuan, Jeremy, Nishida, Kozo, Nishida, Naoki, Nishide, Hiroyo, Ogishima, Soichi, Ohta, Tazro, Okuda, Shujiro, Paten, Benedict, Perret, Jean-Luc, Prathipati, Philip, Prins, Pjotr, Queralt-Rosinach, Núria, Shinmachi, Daisuke, Suzuki, Shinya, Tabata, Tsuyosi, Takatsuki, Terue, Taylor, Kieron, Thompson, Mark, Uchiyama, Ikuo, Vieira, Bruno, Wei, Chih-Hsuan, Wilkinson, Mark, Yamada, Issaku, Yamanaka, Ryota, Yoshitake, Kazutoshi, Yoshizawa, Akiyasu C., Dumontier, Michel, Kosaki, Kenjiro, Takagi, Toshihisa
Publicado no F1000Res (2020)