Meeting Review: Plant Bioinformatics at the NSF and NPGI (PAMGX Satellite) Meetings

Por Bruskiewich, Richard
Publicado em 2002

RiceGeneThresher: a web-based application for mining genes underlying QTL in rice genome

Por Thongjuea, Supat, Ruanjaichon, Vinitchan, Bruskiewich, Richard, Vanavichit, Apichart
Publicado em 2009

Identification of candidate genes for drought stress tolerance in rice by the integration of a genetic (QTL) map with the rice genome physical map

Por Wang, Xu-sheng, Zhu, Jun, Mansueto, Locedie, Bruskiewich, Richard
Publicado em 2005

Light-regulated and cell-specific methylation of the maize PEPC promoter

Por Tolley, Ben J., Woodfield, Helen, Wanchana, Samart, Bruskiewich, Richard, Hibberd, Julian M.
Publicado em 2012

The International Rice Information System. A Platform for Meta-Analysis of Rice Crop Data

Por McLaren, Christopher Graham, Bruskiewich, Richard M., Portugal, Arllet M., Cosico, Alexander B.
Publicado em 2005

Sequencing Multiple and Diverse Rice Varieties. Connecting Whole-Genome Variation with Phenotypes

Por McNally, Kenneth L., Bruskiewich, Richard, Mackill, David, Buell, C. Robin, Leach, Jan E., Leung, Hei
Publicado em 2006

Characterization of statistical features for plant microRNA prediction

Por Thakur, Vivek, Wanchana, Samart, Xu, Mercedes, Bruskiewich, Richard, Quick, William Paul, Mosig, Axel, Zhu, Xin-Guang
Publicado em 2011

Development of a novel data mining tool to find cis-elements in rice gene promoter regions

Por Doi, Koji, Hosaka, Aeni, Nagata, Toshifumi, Satoh, Kouji, Suzuki, Kohji, Mauleon, Ramil, Mendoza, Michael J, Bruskiewich, Richard, Kikuchi, Shoshi
Publicado em 2008

Multifunctional crop trait ontology for breeders' data: field book, annotation, data discovery and semantic enrichment of the literature

Por Shrestha, Rosemary, Arnaud, Elizabeth, Mauleon, Ramil, Senger, Martin, Davenport, Guy F., Hancock, David, Morrison, Norman, Bruskiewich, Richard, McLaren, Graham
Publicado em 2010

Transcriptional regulatory network triggered by oxidative signals configures the early response mechanisms of japonica rice to chilling stress

Por Wijaya Edward, Mauleon Ramil, Xu Fuyu, Herath Venura, Mohanty Bijayalaxmi, Park Myoung, Yun Kil-Young, Bajic Vladimir B, Bruskiewich Richard, de los Reyes Benildo G
Publicado em 2010-01-01

Transcriptional regulatory network triggered by oxidative signals configures the early response mechanisms of japonica rice to chilling stress

Por Yun, Kil-Young, Park, Myoung Ryoul, Mohanty, Bijayalaxmi, Herath, Venura, Xu, Fuyu, Mauleon, Ramil, Wijaya, Edward, Bajic, Vladimir B, Bruskiewich, Richard, de los Reyes, Benildo G
Publicado em 2010

The Generation Challenge Programme comparative plant stress-responsive gene catalogue

Por Wanchana, Samart, Thongjuea, Supat, Ulat, Victor Jun, Anacleto, Mylah, Mauleon, Ramil, Conte, Matthieu, Rouard, Mathieu, Ruiz, Manuel, Krishnamurthy, Nandini, Sjolander, Kimmen, van Hintum, Theo, Bruskiewich, Richard M.
Publicado em 2008

A SNP Resource for Human Chromosome 22: Extracting Dense Clusters of SNPs From the Genomic Sequence

Por Dawson, Elisabeth, Chen, Yuan, Hunt, Sarah, Smink, Luc J., Hunt, Adrienne, Rice, Kate, Livingston, Simon, Bumpstead, Suzannah, Bruskiewich, Richard, Sham, Pak, Ganske, Rocky, Adams, Mark, Kawasaki, Kazuhiko, Shimizu, Nobuyoshi, Minoshima, Shinsei, Roe, Bruce, Bentley, David, Dunham, Ian
Publicado em 2001

Genomewide SNP variation reveals relationships among landraces and modern varieties of rice

Por McNally, Kenneth L., Childs, Kevin L., Bohnert, Regina, Davidson, Rebecca M., Zhao, Keyan, Ulat, Victor J., Zeller, Georg, Clark, Richard M., Hoen, Douglas R., Bureau, Thomas E., Stokowski, Renee, Ballinger, Dennis G., Frazer, Kelly A., Cox, David R., Padhukasahasram, Badri, Bustamante, Carlos D., Weigel, Detlef, Mackill, David J., Bruskiewich, Richard M., Rätsch, Gunnar, Buell, C. Robin, Leung, Hei, Leach, Jan E.
Publicado em 2009

The Implicitome: A Resource for Rationalizing Gene-Disease Associations

Por Hettne, Kristina M., Thompson, Mark, van Haagen, Herman H. H. B. M., van der Horst, Eelke, Kaliyaperumal, Rajaram, Mina, Eleni, Tatum, Zuotian, Laros, Jeroen F. J., van Mulligen, Erik M., Schuemie, Martijn, Aten, Emmelien, Li, Tong Shu, Bruskiewich, Richard, Good, Benjamin M., Su, Andrew I., Kors, Jan A., den Dunnen, Johan, van Ommen, Gert-Jan B., Roos, Marco, ‘t Hoen, Peter A.C., Mons, Barend, Schultes, Erik A.
Publicado no PLoS One (2016)

Evaluating Methods for Isolating Total RNA and Predicting the Success of Sequencing Phylogenetically Diverse Plant Transcriptomes

Por Johnson, Marc T. J., Carpenter, Eric J., Tian, Zhijian, Bruskiewich, Richard, Burris, Jason N., Carrigan, Charlotte T., Chase, Mark W., Clarke, Neil D., Covshoff, Sarah, dePamphilis, Claude W., Edger, Patrick P., Goh, Falicia, Graham, Sean, Greiner, Stephan, Hibberd, Julian M., Jordon-Thaden, Ingrid, Kutchan, Toni M., Leebens-Mack, James, Melkonian, Michael, Miles, Nicholas, Myburg, Henrietta, Patterson, Jordan, Pires, J. Chris, Ralph, Paula, Rolf, Megan, Sage, Rowan F., Soltis, Douglas, Soltis, Pamela, Stevenson, Dennis, Stewart, C. Neal, Surek, Barbara, Thomsen, Christina J. M., Villarreal, Juan Carlos, Wu, Xiaolei, Zhang, Yong, Deyholos, Michael K., Wong, Gane Ka-Shu
Publicado em 2012

The Generation Challenge Programme Platform: Semantic Standards and Workbench for Crop Science

Por Bruskiewich, Richard, Senger, Martin, Davenport, Guy, Ruiz, Manuel, Rouard, Mathieu, Hazekamp, Tom, Takeya, Masaru, Doi, Koji, Satoh, Kouji, Costa, Marcos, Simon, Reinhard, Balaji, Jayashree, Akintunde, Akinnola, Mauleon, Ramil, Wanchana, Samart, Shah, Trushar, Anacleto, Mylah, Portugal, Arllet, Ulat, Victor Jun, Thongjuea, Supat, Braak, Kyle, Ritter, Sebastian, Dereeper, Alexis, Skofic, Milko, Rojas, Edwin, Martins, Natalia, Pappas, Georgios, Alamban, Ryan, Almodiel, Roque, Barboza, Lord Hendrix, Detras, Jeffrey, Manansala, Kevin, Mendoza, Michael Jonathan, Morales, Jeffrey, Peralta, Barry, Valerio, Rowena, Zhang, Yi, Gregorio, Sergio, Hermocilla, Joseph, Echavez, Michael, Yap, Jan Michael, Farmer, Andrew, Schiltz, Gary, Lee, Jennifer, Casstevens, Terry, Jaiswal, Pankaj, Meintjes, Ayton, Wilkinson, Mark, Good, Benjamin, Wagner, James, Morris, Jane, Marshall, David, Collins, Anthony, Kikuchi, Shoshi, Metz, Thomas, McLaren, Graham, van Hintum, Theo
Publicado em 2008

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*

Por Katayama, Toshiaki, Arakawa, Kazuharu, Nakao, Mitsuteru, Ono, Keiichiro, Aoki-Kinoshita, Kiyoko F, Yamamoto, Yasunori, Yamaguchi, Atsuko, Kawashima, Shuichi, Chun, Hong-Woo, Aerts, Jan, Aranda, Bruno, Barboza, Lord Hendrix, Bonnal, Raoul JP, Bruskiewich, Richard, Bryne, Jan C, Fernández, José M, Funahashi, Akira, Gordon, Paul MK, Goto, Naohisa, Groscurth, Andreas, Gutteridge, Alex, Holland, Richard, Kano, Yoshinobu, Kawas, Edward A, Kerhornou, Arnaud, Kibukawa, Eri, Kinjo, Akira R, Kuhn, Michael, Lapp, Hilmar, Lehvaslaiho, Heikki, Nakamura, Hiroyuki, Nakamura, Yasukazu, Nishizawa, Tatsuya, Nobata, Chikashi, Noguchi, Tamotsu, Oinn, Thomas M, Okamoto, Shinobu, Owen, Stuart, Pafilis, Evangelos, Pocock, Matthew, Prins, Pjotr, Ranzinger, René, Reisinger, Florian, Salwinski, Lukasz, Schreiber, Mark, Senger, Martin, Shigemoto, Yasumasa, Standley, Daron M, Sugawara, Hideaki, Tashiro, Toshiyuki, Trelles, Oswaldo, Vos, Rutger A, Wilkinson, Mark D, York, William, Zmasek, Christian M, Asai, Kiyoshi, Takagi, Toshihisa
Publicado em 2010

Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana

Por Itoh, Takeshi, Tanaka, Tsuyoshi, Barrero, Roberto A., Yamasaki, Chisato, Fujii, Yasuyuki, Hilton, Phillip B., Antonio, Baltazar A., Aono, Hideo, Apweiler, Rolf, Bruskiewich, Richard, Bureau, Thomas, Burr, Frances, Costa de Oliveira, Antonio, Fuks, Galina, Habara, Takuya, Haberer, Georg, Han, Bin, Harada, Erimi, Hiraki, Aiko T., Hirochika, Hirohiko, Hoen, Douglas, Hokari, Hiroki, Hosokawa, Satomi, Hsing, Yue, Ikawa, Hiroshi, Ikeo, Kazuho, Imanishi, Tadashi, Ito, Yukiyo, Jaiswal, Pankaj, Kanno, Masako, Kawahara, Yoshihiro, Kawamura, Toshiyuki, Kawashima, Hiroaki, Khurana, Jitendra P., Kikuchi, Shoshi, Komatsu, Setsuko, Koyanagi, Kanako O., Kubooka, Hiromi, Lieberherr, Damien, Lin, Yao-Cheng, Lonsdale, David, Matsumoto, Takashi, Matsuya, Akihiro, McCombie, W. Richard, Messing, Joachim, Miyao, Akio, Mulder, Nicola, Nagamura, Yoshiaki, Nam, Jongmin, Namiki, Nobukazu, Numa, Hisataka, Nurimoto, Shin, O’Donovan, Claire, Ohyanagi, Hajime, Okido, Toshihisa, OOta, Satoshi, Osato, Naoki, Palmer, Lance E., Quetier, Francis, Raghuvanshi, Saurabh, Saichi, Naomi, Sakai, Hiroaki, Sakai, Yasumichi, Sakata, Katsumi, Sakurai, Tetsuya, Sato, Fumihiko, Sato, Yoshiharu, Schoof, Heiko, Seki, Motoaki, Shibata, Michie, Shimizu, Yuji, Shinozaki, Kazuo, Shinso, Yuji, Singh, Nagendra K., Smith-White, Brian, Takeda, Jun-ichi, Tanino, Motohiko, Tatusova, Tatiana, Thongjuea, Supat, Todokoro, Fusano, Tsugane, Mika, Tyagi, Akhilesh K., Vanavichit, Apichart, Wang, Aihui, Wing, Rod A., Yamaguchi, Kaori, Yamamoto, Mayu, Yamamoto, Naoyuki, Yu, Yeisoo, Zhang, Hao, Zhao, Qiang, Higo, Kenichi, Burr, Benjamin, Gojobori, Takashi, Sasaki, Takuji
Publicado em 2007