The Energy Costs of Insulators in Biochemical Networks

av Barton, John P., Sontag, Eduardo D.
Publicerad 2013

Scaling laws describe memories of host–pathogen riposte in the HIV population

av Barton, John P., Kardar, Mehran, Chakraborty, Arup K.
I publikationen Proc Natl Acad Sci U S A (2015)

Role of framework mutations and antibody flexibility in the evolution of broadly neutralizing antibodies

av Ovchinnikov, Victor, Louveau, Joy E, Barton, John P, Karplus, Martin, Chakraborty, Arup K
I publikationen eLife (2018)

Deconvolving mutational patterns of poliovirus outbreaks reveals its intrinsic fitness landscape

av Quadeer, Ahmed A., Barton, John P., Chakraborty, Arup K., McKay, Matthew R.
I publikationen Nat Commun (2020)

Cross-serotypically conserved epitope recommendations for a universal T cell-based dengue vaccine

av Ahmed, Syed Faraz, Quadeer, Ahmed A., Barton, John P., McKay, Matthew R.
I publikationen PLoS Negl Trop Dis (2020)

MPL resolves genetic linkage in fitness inference from complex evolutionary histories

av Sohail, Muhammad Saqib, Louie, Raymond H. Y., McKay, Matthew R., Barton, John P.
I publikationen Nat Biotechnol (2020)

Spin models inferred from patient-derived viral sequence data faithfully describe HIV fitness landscapes

av Shekhar, Karthik, Ruberman, Claire F., Ferguson, Andrew L., Barton, John P., Kardar, Mehran, Chakraborty, Arup K.
I publikationen Phys Rev E Stat Nonlin Soft Matter Phys (2013)

Fitness landscape of the human immunodeficiency virus envelope protein that is targeted by antibodies

av Louie, Raymond H. Y., Kaczorowski, Kevin J., Barton, John P., Chakraborty, Arup K., McKay, Matthew R.
I publikationen Proc Natl Acad Sci U S A (2018)

Relative rate and location of intra-host HIV evolution to evade cellular immunity are predictable

av Barton, John P., Goonetilleke, Nilu, Butler, Thomas C., Walker, Bruce D., McMichael, Andrew J., Chakraborty, Arup K.
I publikationen Nat Commun (2016)

The Fitness Landscape of HIV-1 Gag: Advanced Modeling Approaches and Validation of Model Predictions by In Vitro Testing

av Mann, Jaclyn K., Barton, John P., Ferguson, Andrew L., Omarjee, Saleha, Walker, Bruce D., Chakraborty, Arup, Ndung'u, Thumbi
Publicerad 2014

Adenovirus-vectored vaccine containing multidimensionally conserved parts of the HIV proteome is immunogenic in rhesus macaques

av Murakowski, Dariusz K., Barton, John P., Peter, Lauren, Chandrashekar, Abishek, Bondzie, Esther, Gao, Ang, Barouch, Dan H., Chakraborty, Arup K.
I publikationen Proc Natl Acad Sci U S A (2021)

Predominance of positive epistasis among drug resistance-associated mutations in HIV-1 protease

av Zhang, Tian-hao, Dai, Lei, Barton, John P., Du, Yushen, Tan, Yuxiang, Pang, Wenwen, Chakraborty, Arup K., Lloyd-Smith, James O., Sun, Ren
I publikationen PLoS Genet (2020)

Modelling and in vitro testing of the HIV-1 Nef fitness landscape

av Barton, John P, Rajkoomar, Erasha, Mann, Jaclyn K, Murakowski, Dariusz K, Toyoda, Mako, Mahiti, Macdonald, Mwimanzi, Phillip, Ueno, Takamasa, Chakraborty, Arup K, Ndung’u, Thumbi
I publikationen Virus Evol (2019)

Deconstruction of the Ras switching cycle through saturation mutagenesis

av Bandaru, Pradeep, Shah, Neel H, Bhattacharyya, Moitrayee, Barton, John P, Kondo, Yasushi, Cofsky, Joshua C, Gee, Christine L, Chakraborty, Arup K, Kortemme, Tanja, Ranganathan, Rama, Kuriyan, John
I publikationen eLife (2017)

Paired quantitative and qualitative assessment of the replication-competent HIV-1 reservoir and comparison with integrated proviral DNA

av Lorenzi, Julio C. C., Cohen, Yehuda Z., Cohn, Lillian B., Kreider, Edward F., Barton, John P., Learn, Gerald H., Oliveira, Thiago, Lavine, Christy L., Horwitz, Joshua A., Settler, Allison, Jankovic, Mila, Seaman, Michael S., Chakraborty, Arup K., Hahn, Beatrice H., Caskey, Marina, Nussenzweig, Michel C.
I publikationen Proc Natl Acad Sci U S A (2016)

Characterization of Intact Proviruses in Blood and Lymph Node from HIV-Infected Individuals Undergoing Analytical Treatment Interruption

av Vibholm, Line K., Lorenzi, Julio C. C., Pai, Joy A., Cohen, Yehuda Z., Oliveira, Thiago Y., Barton, John P., Garcia Noceda, Marco, Lu, Ching-Lan, Ablanedo-Terrazas, Yuria, Del Rio Estrada, Perla M., Reyes-Teran, Gustavo, Tolstrup, Martin, Denton, Paul W., Damsgaard, Tine, Søgaard, Ole S., Nussenzweig, Michel C.
I publikationen J Virol (2019)

Relationship between latent and rebound viruses in a clinical trial of anti–HIV-1 antibody 3BNC117

av Cohen, Yehuda Z., Lorenzi, Julio C.C., Krassnig, Lisa, Barton, John P., Burke, Leah, Pai, Joy, Lu, Ching-Lan, Mendoza, Pilar, Oliveira, Thiago Y., Sleckman, Christopher, Millard, Katrina, Butler, Allison L., Dizon, Juan P., Belblidia, Shiraz A., Witmer-Pack, Maggi, Shimeliovich, Irina, Gulick, Roy M., Seaman, Michael S., Jankovic, Mila, Caskey, Marina, Nussenzweig, Michel C.
I publikationen J Exp Med (2018)

Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure

av Rando, Halie M., MacLean, Adam L., Lee, Alexandra J., Lordan, Ronan, Ray, Sandipan, Bansal, Vikas, Skelly, Ashwin N., Sell, Elizabeth, Dziak, John J., Shinholster, Lamonica, McGowan, Lucy D’Agostino, Guebila, Marouen Ben, Wellhausen, Nils, Knyazev, Sergey, Boca, Simina M., Capone, Stephen, Qi, Yanjun, Park, YoSon, Sun, Yuchen, Mai, David, Boerckel, Joel D, Brueffer, Christian, Byrd, James Brian, Kamil, Jeremy P., Wang, Jinhui, Velazquez, Ryan, Szeto, Gregory L, Barton, John P., Goel, Rishi Raj, Mangul, Serghei, Lubiana, Tiago, Gitter, Anthony, Greene, Casey S.
I publikationen ArXiv (2021)