A direct approach to estimating false discovery rates conditional on covariates

by Boca, Simina M., Leek, Jeffrey T.
Published in PeerJ (2018)

Mathematical properties of F(st) between admixed populations and their parental source populations

by Boca, Simina M., Rosenberg, Noah A.
Published 2011

On the heterozygosity of an admixed population

by Boca, Simina M., Huang, Lucy, Rosenberg, Noah A.
Published in J Math Biol (2020)

Multivariate meta-analysis with an increasing number of parameters

by Boca, Simina M., Pfeiffer, Ruth M., Sampson, Joshua N.
Published in Biom J (2017)

POPSTR: Inference of Admixed Population Structure Based on Single-Nucleotide Polymorphisms and Copy Number Variations

by Ahn, Jaeil, Conkright, Brian, Boca, Simina M., Madhavan, Subha
Published in J Comput Biol (2018)

FWER and FDR control when testing multiple mediators

by Sampson, Joshua N, Boca, Simina M, Moore, Steven C, Heller, Ruth
Published in Bioinformatics (2018)

The Relationship Between Haplotype-Based F(ST) and Haplotype Length

by Mehta, Rohan S., Feder, Alison F., Boca, Simina M., Rosenberg, Noah A.
Published in Genetics (2019)

Group Testing in Mediation Analysis

by Derkach, Andriy, Moore, Steven C., Boca, Simina M., Sampson, Joshua N.
Published in Stat Med (2020)

A Decision-Theory Approach to Interpretable Set Analysis for High-Dimensional Data

by Boca, Simina M., Bravo, Héctor Corrada, Caffo, Brian, Leek, Jeffrey T., Parmigiani, Giovanni
Published 2013

Patient-oriented gene set analysis for cancer mutation data

by Boca, Simina M, Kinzler, Kenneth W, Velculescu, Victor E, Vogelstein, Bert, Parmigiani, Giovanni
Published 2010

Testing multiple biological mediators simultaneously

by Boca, Simina M., Sinha, Rashmi, Cross, Amanda J., Moore, Steven C., Sampson, Joshua N.
Published 2014

Future of Evidence Synthesis in Precision Oncology: Between Systematic Reviews and Biocuration

by Boca, Simina M., Panagiotou, Orestis A., Rao, Shruti, McGarvey, Peter B., Madhavan, Subha
Published in JCO Precis Oncol (2018)

Modulation of Radiation Response by the Tetrahydrobiopterin Pathway

by Pathak, Rupak, Cheema, Amrita K., Boca, Simina M., Krager, Kimberly J., Hauer-Jensen, Martin, Aykin-Burns, Nukhet
Published in Antioxidants (Basel) (2015)

Evidence-Based Network Approach to Recommending Targeted Cancer Therapies

by Kancherla, Jayaram, Rao, Shruti, Bhuvaneshwar, Krithika, Riggins, Rebecca B., Beckman, Robert A., Madhavan, Subha, Corrada Bravo, Héctor, Boca, Simina M.
Published in JCO Clin Cancer Inform (2020)

Quantification and expert evaluation of evidence for chemopredictive biomarkers to personalize cancer treatment

by Rao, Shruti, Beckman, Robert A., Riazi, Shahla, Yabar, Cinthya S., Boca, Simina M., Marshall, John L., Pishvaian, Michael J., Brody, Jonathan R., Madhavan, Subha
Published in Oncotarget (2016)

Discovery of potential urine-accessible metabolite biomarkers associated with muscle disease and corticosteroid response in the mdx mouse model for Duchenne

by Thangarajh, Mathula, Zhang, Aiping, Gill, Kirandeep, Ressom, Habtom W., Li, Zhenzhi, Varghese, Rency S., Hoffman, Eric P., Nagaraju, Kanneboyina, Hathout, Yetrib, Boca, Simina M.
Published in PLoS One (2019)

Sources of Variability in Metabolite Measurements from Urinary Samples

by Xiao, Qian, Moore, Steven C., Boca, Simina M., Matthews, Charles E., Rothman, Nathaniel, Stolzenberg-Solomon, Rachael Z., Sinha, Rashmi, Cross, Amanda J., Sampson, Joshua N.
Published 2014

EGR1 regulates cellular metabolism and survival in endocrine resistant breast cancer

by Shajahan-Haq, Ayesha N., Boca, Simina M., Jin, Lu, Bhuvaneshwar, Krithika, Gusev, Yuriy, Cheema, Amrita K., Demas, Diane D., Raghavan, Kristopher S., Michalek, Ryan, Madhavan, Subha, Clarke, Robert
Published in Oncotarget (2017)

Parvalbumin(+) and Npas1(+) Pallidal Neurons Have Distinct Circuit Topology and Function

by Pamukcu, Arin, Cui, Qiaoling, Xenias, Harry S., Berceau, Brianna L., Augustine, Elizabeth C., Fan, Isabel, Chalasani, Saivasudha, Hantman, Adam W., Lerner, Talia N., Boca, Simina M., Chan, C. Savio
Published in J Neurosci (2020)

Serum biomarkers of habitual coffee consumption may provide insight into the mechanism underlying the association between coffee consumption and colorectal cancer(1)(2)(3)(4)(5)

by Guertin, Kristin A, Loftfield, Erikka, Boca, Simina M, Sampson, Joshua N, Moore, Steven C, Xiao, Qian, Huang, Wen-Yi, Xiong, Xiaoqin, Freedman, Neal D, Cross, Amanda J, Sinha, Rashmi
Published in Am J Clin Nutr (2015)