Analysis and Elimination of a Bias in Targeted Molecular Dynamics Simulations of Conformational Transitions: Application to Calmodulin

Por Ovchinnikov, Victor, Karplus, Martin
Publicado em 2012

Investigations of α-helix↔β-sheet transition pathways in a miniprotein using the finite-temperature string method

Por Ovchinnikov, Victor, Karplus, Martin
Publicado em 2014

A Simplified Confinement Method (SCM) for Calculating Absolute Free Energies and Free Energy and Entropy Differences

Por Ovchinnikov, Victor, Cecchini, Marco, Karplus, Martin
Publicado em 2013

Mechanical coupling in myosin V: a simulation study

Por Ovchinnikov, Victor, Trout, Bernhardt L., Karplus, Martin
Publicado em 2009

Free energy of conformational transition paths in biomolecules: The string method and its application to myosin VI

Por Ovchinnikov, Victor, Karplus, Martin, Vanden-Eijnden, Eric
Publicado em 2011

Regulation and Plasticity of Catalysis in Enzymes: Insights from Analysis of Mechanochemical Coupling in Myosin

Por Lu, Xiya, Ovchinnikov, Victor, Demapan, Darren, Roston, Daniel, Cui, Qiang
Publicado no Biochemistry (2017)

QM/MM free energy simulations: recent progress and challenges

Por Lu, Xiya, Fang, Dong, Ito, Shingo, Okamoto, Yuko, Ovchinnikov, Victor, Cui, Qiang
Publicado no Mol Simul (2016)

Role of framework mutations and antibody flexibility in the evolution of broadly neutralizing antibodies

Por Ovchinnikov, Victor, Louveau, Joy E, Barton, John P, Karplus, Martin, Chakraborty, Arup K
Publicado no eLife (2018)