The Complexity of the Dirichlet Model for Multiple Alignment Data

Por Yu, Yi-Kuo, Altschul, Stephen F.
Publicado em 2011

Bayesian Top-Down Protein Sequence Alignment with Inferred Position-Specific Gap Penalties

Por Neuwald, Andrew F., Altschul, Stephen F.
Publicado no PLoS Comput Biol (2016)

Inference of Functionally-Relevant N-acetyltransferase Residues Based on Statistical Correlations

Por Neuwald, Andrew F., Altschul, Stephen F.
Publicado no PLoS Comput Biol (2016)

Initial Cluster Analysis

Por Altschul, Stephen F., Neuwald, Andrew F.
Publicado no J Comput Biol (2018)

Statistical investigations of protein residue direct couplings

Por Neuwald, Andrew F., Altschul, Stephen F.
Publicado no PLoS Comput Biol (2018)

An assessment of substitution scores for protein profile–profile comparison

Por Ye, Xugang, Wang, Guoli, Altschul, Stephen F.
Publicado em 2011

Outlier detection in BLAST hits

Por Shah, Nidhi, Altschul, Stephen F., Pop, Mihai
Publicado no Algorithms Mol Biol (2018)

Compositional Adjustment of Dirichlet Mixture Priors

Por Ye, Xugang, Yu, Yi-Kuo, Altschul, Stephen F.
Publicado em 2010

On the Inference of Dirichlet Mixture Priors for Protein Sequence Comparison

Por Ye, Xugang, Yu, Yi-Kuo, Altschul, Stephen F.
Publicado em 2011

Dirichlet Mixtures, the Dirichlet Process, and the Structure of Protein Space

Por Nguyen, Viet-An, Boyd-Graber, Jordan, Altschul, Stephen F.
Publicado em 2013

Inferring joint sequence-structural determinants of protein functional specificity

Por Neuwald, Andrew F, Aravind, L, Altschul, Stephen F
Publicado no eLife (2018)

The estimation of statistical parameters for local alignment score distributions

Por Altschul, Stephen F., Bundschuh, Ralf, Olsen, Rolf, Hwa, Terence
Publicado em 2001

The compositional adjustment of amino acid substitution matrices

Por Yu, Yi-Kuo, Wootton, John C., Altschul, Stephen F.
Publicado em 2003

Characterization of Gene Expression in Resting and Activated Mast Cells

Por Chen, Huaxian, Centola, Michael, Altschul, Stephen F., Metzger, Henry
Publicado em 1998

The effectiveness of position- and composition-specific gap costs for protein similarity searches

Por Stojmirović, Aleksandar, Gertz, E. Michael, Altschul, Stephen F., Yu, Yi-Kuo
Publicado em 2008

The Construction and Use of Log-Odds Substitution Scores for Multiple Sequence Alignment

Por Altschul, Stephen F., Wootton, John C., Zaslavsky, Elena, Yu, Yi-Kuo
Publicado em 2010

Log-odds sequence logos

Por Yu, Yi-Kuo, Capra, John A., Stojmirović, Aleksandar, Landsman, David, Altschul, Stephen F.
Publicado no Bioinformatics (2015)

Retrieval accuracy, statistical significance and compositional similarity in protein sequence database searches

Por Yu, Yi-Kuo, Gertz, E. Michael, Agarwala, Richa, Schäffer, Alejandro A., Altschul, Stephen F.
Publicado em 2006

Composition-based statistics and translated nucleotide searches: Improving the TBLASTN module of BLAST

Por Gertz, E Michael, Yu, Yi-Kuo, Agarwala, Richa, Schäffer, Alejandro A, Altschul, Stephen F
Publicado em 2006

PSI-BLAST pseudocounts and the minimum description length principle

Por Altschul, Stephen F., Gertz, E. Michael, Agarwala, Richa, Schäffer, Alejandro A., Yu, Yi-Kuo
Publicado em 2009