A combinatorial optimization approach for diverse motif finding applications

Por Zaslavsky, Elena, Singh, Mona
Publicado em 2006

M are better than one: an ensemble-based motif finder and its application to regulatory element prediction

Por Yanover, Chen, Singh, Mona, Zaslavsky, Elena
Publicado em 2009

Inferring PDZ Domain Multi-Mutant Binding Preferences from Single-Mutant Data

Por Zaslavsky, Elena, Bradley, Philip, Yanover, Chen
Publicado em 2010

A cost-aggregating integer linear program for motif finding

Por Kingsford, Carl, Zaslavsky, Elena, Singh, Mona
Publicado em 2011

Computational Approaches to Understanding Dendritic Cell Responses to Influenza Virus Infection

Por Zaslavsky, Elena, Hayot, Fernand, Sealfon, Stuart C.
Publicado em 2012

CellCODE: a robust latent variable approach to differential expression analysis for heterogeneous cell populations

Por Chikina, Maria, Zaslavsky, Elena, Sealfon, Stuart C.
Publicado no Bioinformatics (2015)

The Construction and Use of Log-Odds Substitution Scores for Multiple Sequence Alignment

Por Altschul, Stephen F., Wootton, John C., Zaslavsky, Elena, Yu, Yi-Kuo
Publicado em 2010

β-Catenin Regulates GnRH-Induced FSHβ Gene Expression

Por Wang, Qian, Chikina, Maria, Zaslavsky, Elena, Pincas, Hanna, Sealfon, Stuart C.
Publicado em 2013

Pathway-Level Information ExtractoR (PLIER) for gene expression data

Por Mao, Weiguang, Zaslavsky, Elena, Hartmann, Boris M., Sealfon, Stuart C., Chikina, Maria
Publicado no Nat Methods (2019)

GENE-11. CHROMATIN ACCESSIBILITY DEFINES TRANSCRIPTIONAL DRIVERS OF MIGRATION IN HUMAN GLIOBLASTOMA

Por Tsankova, Nadejda, Erfani, Parsa, Tome-Garcia, Jessica, Nudelman, German, Tsankov, Alexander, Walsh, Martin, Zaslavsky, Elena
Publicado no Neuro Oncol (2017)

ANGI-04. TEAD1 REGULATES CELL MIGRATION IN HUMAN GLIOBLASTOMA IN PART THROUGH EMT-ASSOCIATED CADHERINS

Por Tome-Garcia, Jessica, Erfani, Parsa, Nudelman, German, Tejero, Rut, Friedel, Roland, Zaslavsky, Elena, Tsankova, Nadejda
Publicado no Neuro Oncol (2018)

High resolution annotation of zebrafish transcriptome using long-read sequencing

Por Nudelman, German, Frasca, Antonio, Kent, Brandon, Sadler, Kirsten C., Sealfon, Stuart C., Walsh, Martin J., Zaslavsky, Elena
Publicado no Genome Res (2018)

Reconstruction of regulatory networks through temporal enrichment profiling and its application to H1N1 influenza viral infection

Por Zaslavsky, Elena, Nudelman, German, Marquez, Susanna, Hershberg, Uri, Hartmann, Boris M, Thakar, Juilee, Sealfon, Stuart C, Kleinstein, Steven H
Publicado em 2013

Regulatory Architecture of the LβT2 Gonadotrope Cell Underlying the Response to Gonadotropin-Releasing Hormone

Por Ruf-Zamojski, Frederique, Fribourg, Miguel, Ge, Yongchao, Nair, Venugopalan, Pincas, Hanna, Zaslavsky, Elena, Nudelman, German, Tuminello, Stephanie J., Watanabe, Hideo, Turgeon, Judith L., Sealfon, Stuart C.
Publicado no Front Endocrinol (Lausanne) (2018)

Analysis of chromatin accessibility uncovers TEAD1 as a regulator of migration in human glioblastoma

Por Tome-Garcia, Jessica, Erfani, Parsa, Nudelman, German, Tsankov, Alexander M., Katsyv, Igor, Tejero, Rut, Bin Zhang, Walsh, Martin, Friedel, Roland H., Zaslavsky, Elena, Tsankova, Nadejda M.
Publicado no Nat Commun (2018)

Antiviral response dictated by choreographed cascade of transcription factors

Por Zaslavsky, Elena, Hershberg, Uri, Seto, Jeremy, Pham, Alissa M., Marquez, Susanna, Duke, Jamie L., Wetmur, James G., tenOever, Benjamin R., Sealfon, Stuart C., Kleinstein, Steven H.
Publicado em 2010

Interpretation of an individual functional genomics experiment guided by massive public data

Por Lee, Young-suk, Wong, Aaron K., Tadych, Alicja, Hartmann, Boris M., Park, Christopher Y., DeJesus, Veronica A., Ramos, Irene, Zaslavsky, Elena, Sealfon, Stuart C., Troyanskaya, Olga G.
Publicado no Nat Methods (2018)

Interactive Big Data Resource to Elucidate Human Immune Pathways and Diseases

Por Gorenshteyn, Dmitriy, Zaslavsky, Elena, Fribourg, Miguel, Park, Christopher Y., Wong, Aaron K., Tadych, Alicja, Hartmannz, Boris M., Albrecht, Randy A., García-Sastre, Adolfo, Kleinstein, Steven H., Troyanskaya, Olga G., Sealfon, Stuart C.
Publicado no Immunity (2015)

Single-cell transcriptional profiles in human skeletal muscle

Por Rubenstein, Aliza B., Smith, Gregory R., Raue, Ulrika, Begue, Gwénaëlle, Minchev, Kiril, Ruf-Zamojski, Frederique, Nair, Venugopalan D., Wang, Xingyu, Zhou, Lan, Zaslavsky, Elena, Trappe, Todd A., Trappe, Scott, Sealfon, Stuart C.
Publicado no Sci Rep (2020)

Astrocytic TYMP and VEGFA drive blood–brain barrier opening in inflammatory central nervous system lesions

Por Chapouly, Candice, Tadesse Argaw, Azeb, Horng, Sam, Castro, Kamilah, Zhang, Jingya, Asp, Linnea, Loo, Hannah, Laitman, Benjamin M., Mariani, John N., Straus Farber, Rebecca, Zaslavsky, Elena, Nudelman, German, Raine, Cedric S., John, Gareth R.
Publicado no Brain (2015)