Meta-analysis of cell- specific transcriptomic data using fuzzy c-means clustering discovers versatile viral responsive genes

Por Khan, Atif, Katanic, Dejan, Thakar, Juilee
Publicado no BMC Bioinformatics (2017)

Executable pathway analysis using ensemble discrete-state modeling for large-scale data

Por Palli, Rohith, Palshikar, Mukta G., Thakar, Juilee
Publicado no PLoS Comput Biol (2019)

Optimized logic rules reveal interferon‐γ‐induced modes regulated by histone deacetylases and protein tyrosine phosphatases

Por Van Twisk, Daniel, Murphy, Shawn P., Thakar, Juilee
Publicado no Immunology (2017)

Editorial: User-Friendly Tools Applied to Genetics or Systems Biology

Por Nakaya, Helder I., Thakar, Juilee, Maracaja-Coutinho, Vinicius
Publicado no Front Genet (2020)

Constraint-based network model of pathogen–immune system interactions

Por Thakar, Juilee, Saadatpour-Moghaddam, Assieh, Harvill, Eric T., Albert, Réka
Publicado em 2008

FUNNEL-GSEA: FUNctioNal ELastic-net regression in time-course gene set enrichment analysis

Por Zhang, Yun, Topham, David J, Thakar, Juilee, Qiu, Xing
Publicado no Bioinformatics (2017)

Modeling Systems-Level Regulation of Host Immune Responses

Por Thakar, Juilee, Pilione, Mylisa, Kirimanjeswara, Girish, Harvill, Eric T, Albert, Réka
Publicado em 2007

Boolean network simulations for life scientists

Por Albert, István, Thakar, Juilee, Li, Song, Zhang, Ranran, Albert, Réka
Publicado em 2008

Quantitative set analysis for gene expression: a method to quantify gene set differential expression including gene-gene correlations

Por Yaari, Gur, Bolen, Christopher R., Thakar, Juilee, Kleinstein, Steven H.
Publicado em 2013

Dynamic models of immune responses: what is the ideal level of detail?

Por Thakar, Juilee, Poss, Mary, Albert, Réka, Long, Gráinne H, Zhang, Ranran
Publicado em 2010

GESPA: classifying nsSNPs to predict disease association

Por Khurana, Jay K., Reeder, Jay E., Shrimpton, Antony E., Thakar, Juilee
Publicado no BMC Bioinformatics (2015)

Boolean Modeling of Cellular and Molecular Pathways Involved in Influenza Infection

Por Anderson, Christopher S., DeDiego, Marta L., Topham, David J., Thakar, Juilee
Publicado no Comput Math Methods Med (2016)

Novel Sequence-Based Mapping of Recently Emerging H5NX Influenza Viruses Reveals Pandemic Vaccine Candidates

Por Anderson, Christopher S., DeDiego, Marta L., Thakar, Juilee, Topham, David J.
Publicado no PLoS One (2016)

Network Model of Immune Responses Reveals Key Effectors to Single and Co-infection Dynamics by a Respiratory Bacterium and a Gastrointestinal Helminth

Por Thakar, Juilee, Pathak, Ashutosh K., Murphy, Lisa, Albert, Réka, Cattadori, Isabella M.
Publicado em 2012

Frontline Science: c-Myc regulates P-selectin glycoprotein ligand-1 expression in monocytes during HIV-1 infection

Por Connor, Ryan, Jones, Letitia D., Qiu, Xing, Thakar, Juilee, Maggirwar, Sanjay B.
Publicado no J Leukoc Biol (2017)

Overcoming NS1-Mediated Immune Antagonism Involves Both Interferon-Dependent and Independent Mechanisms

Por Thakar, Juilee, Schmid, Sonja, Duke, Jamie L., García-Sastre, Adolfo, Kleinstein, Steven H.
Publicado em 2013

Comparative analysis of anti-viral transcriptomics reveals novel effects of influenza immune antagonism

Por Thakar, Juilee, Hartmann, Boris M., Marjanovic, Nada, Sealfon, Stuart C., Kleinstein, Steven H.
Publicado no BMC Immunol (2015)

The Replica Set Method: A High-throughput Approach to Quantitatively Measure Caenorhabditis elegans Lifespan

Por Cornwell, Adam B., Llop, Jesse R., Salzman, Peter, Thakar, Juilee, Samuelson, Andrew V.
Publicado no J Vis Exp (2018)

Evaluating side effects of nanoparticle‐mediated siRNA delivery to mesenchymal stem cells using next generation sequencing and enrichment analysis

Por Malcolm, Dominic W., Sorrells, Janet E., Van Twisk, Daniel, Thakar, Juilee, Benoit, Danielle S. W.
Publicado no Bioeng Transl Med (2016)

Modelling phagosomal lipid networks that regulate actin assembly

Por Kühnel, Mark, Mayorga, Luis S, Dandekar, Thomas, Thakar, Juilee, Schwarz, Roland, Anes, Elsa, Griffiths, Gareth, Reich, Jens
Publicado em 2008