Limitations of next-generation genome sequence assembly

Por Alkan, Can, Sajjadian, Saba, Eichler, Evan E
Publicado em 2010

Characterization of Missing Human Genome Sequences and Copy-number Polymorphic Insertions

Por Kidd, Jeffrey M., Sampas, Nick, Antonacci, Francesca, Graves, Tina, Fulton, Robert, Hayden, Hillary S., Alkan, Can, Malig, Maika, Ventura, Mario, Giannuzzi, Giuliana, Kallicki, Joelle, Anderson, Paige, Tsalenko, Anya, Yamada, N. Alice, Tsang, Peter, Kaul, Rajinder, Wilson, Richard K., Bruhn, Laurakay, Eichler, Evan E.
Publicado em 2010

Genome-wide analysis of replication timing by next-generation sequencing with E/L Repli-seq

Por Marchal, Claire, Sasaki, Takayo, Vera, Daniel, Wilson, Korey, Sima, Jiao, Rivera-Mulia, Juan Carlos, Trevilla-García, Claudia, Nogues, Coralin, Nafie, Ebtesam, Gilbert, David M.
Publicado no Nat Protoc (2018)

Multi-platform and cross-methodological reproducibility of transcriptome profiling by RNA-seq in the ABRF Next-Generation Sequencing Study

Por Li, Sheng, Tighe, Scott W., Nicolet, Charles M., Grove, Deborah, Levy, Shawn, Farmerie, William, Viale, Agnes, Wright, Chris, Schweitzer, Peter A., Gao, Yuan, Kim, Dewey, Boland, Joe, Hicks, Belynda, Kim, Ryan, Chhangawala, Sagar, Jafari, Nadereh, Raghavachari, Nalini, Gandara, Jorge, Garcia-Reyero, Natàlia, Hendrickson, Cynthia, Roberson, David, Rosenfeld, Jeffrey, Smith, Todd, Underwood, Jason G., Wang, May, Zumbo, Paul, Baldwin, Don A., Grills, George S., Mason, Christopher E.
Publicado em 2014

Small-molecule ligand docking into comparative models with Rosetta

Por Combs, Steven A, DeLuca, Samuel L, DeLuca, Stephanie H, Lemmon, Gordon H, Nannemann, David P, Nguyen, Elizabeth D, Willis, Jordan R, Sheehan, Jonathan H, Meiler, Jens
Publicado no Nat Protoc (2013)

Cell type-specific profiling of protein-DNA interactions without cell isolation using Targeted DamID with next-generation sequencing

Por Marshall, Owen J., Southall, Tony D., Brand, Andrea H.
Publicado no Nat Protoc (2016)

What Risk Assessments of Genetically Modified Organisms Can Learn from Institutional Analyses of Public Health Risks

Por Rajan, S. Ravi, Letourneau, Deborah K.
Publicado em 2012

Mapping genome-wide transcription factor binding sites using DAP-seq

Por Bartlett, Anna, O’Malley, Ronan C., Huang, Shao-shan Carol, Galli, Mary, Nery, Joseph R., Gallavotti, Andrea, Ecker, Joseph R.
Publicado no Nat Protoc (2017)

CRISPR–Cas9-targeted fragmentation and selective sequencing enable massively parallel microsatellite analysis

Por Shin, GiWon, Grimes, Susan M., Lee, HoJoon, Lau, Billy T., Xia, Li C., Ji, Hanlee P.
Publicado no Nat Commun (2017)

Base-resolution stratification of cancer mutations using functional variomics

Por Song, Yi, Ning-Ning, Liu, Limei, Hu, Hui, Wang, Nidhi, Sahni
Publicado no Nat Protoc (2017)

Optical switching of nuclear spin–spin couplings in semiconductors

Por Goto, Atsushi, Ohki, Shinobu, Hashi, Kenjiro, Shimizu, Tadashi
Publicado em 2011

Automated identification of mouse visual areas with intrinsic signal imaging

Por Juavinett, Ashley L, Nauhaus, Ian, Garrett, Marina E, Zhuang, Jun, Callaway, Edward M
Publicado no Nat Protoc (2016)

Evolution in Stage-Structured Populations

Por Barfield, Michael, Holt, Robert D., Gomulkiewicz, Richard
Publicado no Am Nat (2011)

Layered van der Waals crystals with hyperbolic light dispersion

Por Gjerding, M. N., Petersen, R., Pedersen, T. G., Mortensen, N. A., Thygesen, K. S.
Publicado no Nat Commun (2017)

A semi-supervised approach for predicting cell-type specific functional consequences of non-coding variation using MPRAs

Por He, Zihuai, Liu, Linxi, Wang, Kai, Ionita-Laza, Iuliana
Publicado no Nat Commun (2018)

Lipid II overproduction allows direct assay of transpeptidase inhibition by β-lactams

Por Qiao, Yuan, Srisuknimit, Veerasak, Rubino, Frederick, Schaefer, Kaitlin, Ruiz, Natividad, Walker, Suzanne, Kahne, Daniel
Publicado no Nat Chem Biol (2017)

DMS-MaPseq for genome-wide or targeted RNA structure probing in vivo

Por Zubradt, Meghan, Gupta, Paromita, Persad, Sitara, Lambowitz, Alan M., Weissman, Jonathan S., Rouskin, Silvi
Publicado no Nat Methods (2016)

Gene-expression analysis of a colorectal cancer-specific discriminatory transcript set on formalin-fixed, paraffin-embedded (FFPE) tissue samples

Por Kalmár, Alexandra, Wichmann, Barnabás, Galamb, Orsolya, Spisák, Sándor, Tóth, Kinga, Leiszter, Katalin, Nielsen, Boye Schnack, Barták, Barbara Kinga, Tulassay, Zsolt, Molnár, Béla
Publicado no Diagn Pathol (2015)

Promiscuous enzymatic activity-aided multiple-pathway network design for metabolic flux rearrangement in hydroxytyrosol biosynthesis

Por Chen, Wei, Yao, Jun, Meng, Jie, Han, Wenjing, Tao, Yong, Chen, Yihua, Guo, Yixin, Shi, Guizhi, He, Yang, Jin, Jian-Ming, Tang, Shuang-Yan
Publicado no Nat Commun (2019)

Epitaxial nucleation and lateral growth of high-crystalline black phosphorus films on silicon

Por Xu, Yijun, Shi, Xinyao, Zhang, Yushuang, Zhang, Hongtao, Zhang, Qinglin, Huang, Zengli, Xu, Xiangfan, Guo, Jie, Zhang, Han, Sun, Litao, Zeng, Zhongming, Pan, Anlian, Zhang, Kai
Publicado no Nat Commun (2020)