Genome (re‐)annotation and open‐source annotation pipelines

Autor Siezen, Roland J., Van Hijum, Sacha A. F. T.
Vydáno 2010

Mechanisms and Evolution of Control Logic in Prokaryotic Transcriptional Regulation

Autor van Hijum, Sacha A. F. T., Medema, Marnix H., Kuipers, Oscar P.
Vydáno 2009

PanCGHweb: a web tool for genotype calling in pangenome CGH data

Autor Bayjanov, Jumamurat R., Siezen, Roland J., van Hijum, Sacha A. F. T.
Vydáno 2010

Reduce Manual Curation by Combining Gene Predictions from Multiple Annotation Engines, a Case Study of Start Codon Prediction

Autor Ederveen, Thomas H. A., Overmars, Lex, van Hijum, Sacha A. F. T.
Vydáno 2013

Microbial bioinformatics for food safety and production

Autor Alkema, Wynand, Boekhorst, Jos, Wels, Michiel, van Hijum, Sacha A. F. T.
Vydáno v Brief Bioinform (2016)

Transcriptomic signatures of peroxisome proliferator-activated receptor α (PPARα) in different mouse liver models identify novel aspects of its biology

Autor Szalowska, Ewa, Tesfay, Haftu A, van Hijum, Sacha A F T, Kersten, Sander
Vydáno v BMC Genomics (2014)

Comparative Genome Analysis of Lactococcus lactis Indicates Niche Adaptation and Resolves Genotype/Phenotype Disparity

Autor Wels, Michiel, Siezen, Roland, van Hijum, Sacha, Kelly, William J., Bachmann, Herwig
Vydáno v Front Microbiol (2019)

Reconstruction and inference of the Lactococcus lactis MG1363 gene co-expression network

Autor Omony, Jimmy, de Jong, Anne, Kok, Jan, van Hijum, Sacha A. F. T.
Vydáno v PLoS One (2019)

Projector: automatic contig mapping for gap closure purposes

Autor van Hijum, Sacha A. F. T., Zomer, Aldert L., Kuipers, Oscar P., Kok, Jan
Vydáno 2003

Projector 2: contig mapping for efficient gap-closure of prokaryotic genome sequence assemblies

Autor van Hijum, Sacha A. F. T., Zomer, Aldert L., Kuipers, Oscar P., Kok, Jan
Vydáno 2005

Transcriptome Analysis of the Lactococcus lactis ArgR and AhrC Regulons

Autor Larsen, Rasmus, van Hijum, Sacha A. F. T., Martinussen, Jan, Kuipers, Oscar P., Kok, Jan
Vydáno 2008

Genome-Wide Transcriptional Profiling of Clostridium perfringens SM101 during Sporulation Extends the Core of Putative Sporulation Genes and Genes Determining Spore Properties and...

Autor Xiao, Yinghua, van Hijum, Sacha A. F. T., Abee, Tjakko, Wells-Bennik, Marjon H. J.
Vydáno v PLoS One (2015)

PhenoLink - a web-tool for linking phenotype to ~omics data for bacteria: application to gene-trait matching for <it>Lactobacillus plantarum </it>strains

Autor Bayjanov Jumamurat R, Molenaar Douwe, Tzeneva Vesela, Siezen Roland J, van Hijum Sacha A F T
Vydáno 2012-05-01

Transcriptome Analysis Reveals Mechanisms by Which Lactococcus lactis Acquires Nisin Resistance

Autor Kramer, Naomi E., van Hijum, Sacha A. F. T., Knol, Jan, Kok, Jan, Kuipers, Oscar P.
Vydáno 2006

SIMAGE: simulation of DNA-microarray gene expression data

Autor Albers, Casper J, Jansen, Ritsert C, Kok, Jan, Kuipers, Oscar P, van Hijum, Sacha AFT
Vydáno 2006

SpotXplore: a Cytoscape plugin for visual exploration of hotspot expression in gene regulatory networks

Autor Westenberg, Michel A., Roerdink, Jos B.T.M., Kuipers, Oscar P., van Hijum, Sacha A.F.T.
Vydáno 2010

Molecular Description and Industrial Potential of Tn6098 Conjugative Transfer Conferring Alpha-Galactoside Metabolism in Lactococcus lactis

Autor Machielsen, Ronnie, Siezen, Roland J., van Hijum, Sacha A. F. T., van Hylckama Vlieg, Johan E. T.
Vydáno 2011

PhenoLink - a web-tool for linking phenotype to ~omics data for bacteria: application to gene-trait matching for Lactobacillus plantarum strains

Autor Bayjanov, Jumamurat R, Molenaar, Douwe, Tzeneva, Vesela, Siezen, Roland J, van Hijum, Sacha A F T
Vydáno 2012

Transcriptional response of Lactococcus lactis during bacterial emulsification

Autor Tarazanova, Mariya, Huppertz, Thom, Starrenburg, Marjo, Todt, Tilman, van Hijum, Sacha, Kok, Jan, Bachmann, Herwig
Vydáno v PLoS One (2019)

Genome-Wide Prediction and Validation of Sigma70 Promoters in Lactobacillus plantarum WCFS1

Autor Todt, Tilman J., Wels, Michiel, Bongers, Roger S., Siezen, Roland S., van Hijum, Sacha A. F. T., Kleerebezem, Michiel
Vydáno 2012