Genome (re‐)annotation and open‐source annotation pipelines

por Siezen, Roland J., Van Hijum, Sacha A. F. T.
Publicado em 2010

Mechanisms and Evolution of Control Logic in Prokaryotic Transcriptional Regulation

por van Hijum, Sacha A. F. T., Medema, Marnix H., Kuipers, Oscar P.
Publicado em 2009

PanCGHweb: a web tool for genotype calling in pangenome CGH data

por Bayjanov, Jumamurat R., Siezen, Roland J., van Hijum, Sacha A. F. T.
Publicado em 2010

Reduce Manual Curation by Combining Gene Predictions from Multiple Annotation Engines, a Case Study of Start Codon Prediction

por Ederveen, Thomas H. A., Overmars, Lex, van Hijum, Sacha A. F. T.
Publicado em 2013

Microbial bioinformatics for food safety and production

por Alkema, Wynand, Boekhorst, Jos, Wels, Michiel, van Hijum, Sacha A. F. T.
Publicado no Brief Bioinform (2016)

Transcriptomic signatures of peroxisome proliferator-activated receptor α (PPARα) in different mouse liver models identify novel aspects of its biology

por Szalowska, Ewa, Tesfay, Haftu A, van Hijum, Sacha A F T, Kersten, Sander
Publicado no BMC Genomics (2014)

Reconstruction and inference of the Lactococcus lactis MG1363 gene co-expression network

por Omony, Jimmy, de Jong, Anne, Kok, Jan, van Hijum, Sacha A. F. T.
Publicado no PLoS One (2019)

Projector: automatic contig mapping for gap closure purposes

por van Hijum, Sacha A. F. T., Zomer, Aldert L., Kuipers, Oscar P., Kok, Jan
Publicado em 2003

Projector 2: contig mapping for efficient gap-closure of prokaryotic genome sequence assemblies

por van Hijum, Sacha A. F. T., Zomer, Aldert L., Kuipers, Oscar P., Kok, Jan
Publicado em 2005

Transcriptome Analysis of the Lactococcus lactis ArgR and AhrC Regulons

por Larsen, Rasmus, van Hijum, Sacha A. F. T., Martinussen, Jan, Kuipers, Oscar P., Kok, Jan
Publicado em 2008

Genome-Wide Transcriptional Profiling of Clostridium perfringens SM101 during Sporulation Extends the Core of Putative Sporulation Genes and Genes Determining Spore Properties and...

por Xiao, Yinghua, van Hijum, Sacha A. F. T., Abee, Tjakko, Wells-Bennik, Marjon H. J.
Publicado no PLoS One (2015)

PhenoLink - a web-tool for linking phenotype to ~omics data for bacteria: application to gene-trait matching for <it>Lactobacillus plantarum </it>strains

por Bayjanov Jumamurat R, Molenaar Douwe, Tzeneva Vesela, Siezen Roland J, van Hijum Sacha A F T
Publicado em 2012-05-01

Transcriptome Analysis Reveals Mechanisms by Which Lactococcus lactis Acquires Nisin Resistance

por Kramer, Naomi E., van Hijum, Sacha A. F. T., Knol, Jan, Kok, Jan, Kuipers, Oscar P.
Publicado em 2006

SpotXplore: a Cytoscape plugin for visual exploration of hotspot expression in gene regulatory networks

por Westenberg, Michel A., Roerdink, Jos B.T.M., Kuipers, Oscar P., van Hijum, Sacha A.F.T.
Publicado em 2010

Molecular Description and Industrial Potential of Tn6098 Conjugative Transfer Conferring Alpha-Galactoside Metabolism in Lactococcus lactis

por Machielsen, Ronnie, Siezen, Roland J., van Hijum, Sacha A. F. T., van Hylckama Vlieg, Johan E. T.
Publicado em 2011

PhenoLink - a web-tool for linking phenotype to ~omics data for bacteria: application to gene-trait matching for Lactobacillus plantarum strains

por Bayjanov, Jumamurat R, Molenaar, Douwe, Tzeneva, Vesela, Siezen, Roland J, van Hijum, Sacha A F T
Publicado em 2012

Genome-Wide Prediction and Validation of Sigma70 Promoters in Lactobacillus plantarum WCFS1

por Todt, Tilman J., Wels, Michiel, Bongers, Roger S., Siezen, Roland S., van Hijum, Sacha A. F. T., Kleerebezem, Michiel
Publicado em 2012

ESSENTIALS: Software for Rapid Analysis of High Throughput Transposon Insertion Sequencing Data

por Zomer, Aldert, Burghout, Peter, Bootsma, Hester J., Hermans, Peter W. M., van Hijum, Sacha A. F. T.
Publicado em 2012

BAGEL: a web-based bacteriocin genome mining tool

por de Jong, Anne, van Hijum, Sacha A. F. T., Bijlsma, Jetta J. E., Kok, Jan, Kuipers, Oscar P.
Publicado em 2006

Draft Genome Sequence of Lactobacillus plantarum SF2A35B

por Bron, Peter A., Lee, I-Chiao, Backus, Lennart, van Hijum, Sacha A. F. T., Wels, Michiel, Kleerebezem, Michiel
Publicado no Genome Announc (2016)