Understanding the language of gene regulation

по Alkema, Wynand, Wasserman, Wyeth W
Опубликовано 2003

BioVenn – a web application for the comparison and visualization of biological lists using area-proportional Venn diagrams

по Hulsen, Tim, de Vlieg, Jacob, Alkema, Wynand
Опубликовано 2008

Regulog Analysis: Detection of Conserved Regulatory Networks Across Bacteria: Application to Staphylococcus aureus

по Alkema, Wynand B.L., Lenhard, Boris, Wasserman, Wyeth W.
Опубликовано 2004

JASPAR: an open-access database for eukaryotic transcription factor binding profiles

по Sandelin, Albin, Alkema, Wynand, Engström, Pär, Wasserman, Wyeth W., Lenhard, Boris
Опубликовано 2004

MSCAN: identification of functional clusters of transcription factor binding sites

по Alkema, Wynand B.L., Johansson, Öjvind, Lagergren, Jens, Wasserman, Wyeth W.
Опубликовано 2004

PhyloPat: an updated version of the phylogenetic pattern database contains gene neighborhood

по Hulsen, Tim, Groenen, Peter M. A., de Vlieg, Jacob, Alkema, Wynand
Опубликовано 2009

Microbial bioinformatics for food safety and production

по Alkema, Wynand, Boekhorst, Jos, Wels, Michiel, van Hijum, Sacha A. F. T.
Опубликовано в: Brief Bioinform (2016)

Role of alphaArg145 and betaArg263 in the active site of penicillin acylase of Escherichia coli.

по Alkema, Wynand B L, Prins, Antoon K, de Vries, Erik, Janssen, Dick B
Опубликовано 2002

Literature Mining for the Discovery of Hidden Connections between Drugs, Genes and Diseases

по Frijters, Raoul, van Vugt, Marianne, Smeets, Ruben, van Schaik, René, de Vlieg, Jacob, Alkema, Wynand
Опубликовано 2010

Clustering analyses in peptidomics revealed that peptide profiles of infant formulae are descriptive

по Lambers, Tim T, Gloerich, Jolein, van Hoffen, Els, Alkema, Wynand, Hondmann, Dirk H, van Tol, Eric AF
Опубликовано в: Food Sci Nutr (2015)

Fermentation-induced variation in heat and oxidative stress phenotypes of Lactococcus lactis MG1363 reveals transcriptome signatures for robustness

по Dijkstra, Annereinou R, Alkema, Wynand, Starrenburg, Marjo JC, Hugenholtz, Jeroen, van Hijum, Sacha AFT, Bron, Peter A
Опубликовано в: Microb Cell Fact (2014)

CoPub: a literature-based keyword enrichment tool for microarray data analysis

по Frijters, Raoul, Heupers, Bart, van Beek, Pieter, Bouwhuis, Maurice, van Schaik, René, de Vlieg, Jacob, Polman, Jan, Alkema, Wynand
Опубликовано 2008

Strain-Dependent Transcriptome Signatures for Robustness in Lactococcus lactis

по Dijkstra, Annereinou R., Alkema, Wynand, Starrenburg, Marjo J. C., Hugenholtz, Jeroen, van Hijum, Sacha A. F. T., Bron, Peter A.
Опубликовано в: PLoS One (2016)

CoPub update: CoPub 5.0 a text mining system to answer biological questions

по Fleuren, Wilco W. M., Verhoeven, Stefan, Frijters, Raoul, Heupers, Bart, Polman, Jan, van Schaik, René, de Vlieg, Jacob, Alkema, Wynand
Опубликовано 2011

ss-TEA: Entropy based identification of receptor specific ligand binding residues from a multiple sequence alignment of class A GPCRs

по Sanders, Marijn PA, Fleuren, Wilco WM, Verhoeven, Stefan, van den Beld, Sven, Alkema, Wynand, de Vlieg, Jacob, Klomp, Jan PG
Опубликовано 2011

Diversity in Robustness of Lactococcus lactis Strains during Heat Stress, Oxidative Stress, and Spray Drying Stress

по Dijkstra, Annereinou R., Setyawati, Meily C., Bayjanov, Jumamurat R., Alkema, Wynand, van Hijum, Sacha A. F. T., Bron, Peter A., Hugenholtz, Jeroen
Опубликовано 2014

Identification of new biomarker candidates for glucocorticoid induced insulin resistance using literature mining

по Fleuren, Wilco WM, Toonen, Erik JM, Verhoeven, Stefan, Frijters, Raoul, Hulsen, Tim, Rullmann, Ton, van Schaik, René, de Vlieg, Jacob, Alkema, Wynand
Опубликовано 2013

Assessing the metabolic effects of prednisolone in healthy volunteers using urine metabolic profiling

по Ellero-Simatos, Sandrine, Szymańska, Ewa, Rullmann, Ton, Dokter, Wim HA, Ramaker, Raymond, Berger, Ruud, van Iersel, Thijs MP, Smilde, Age K, Hankemeier, Thomas, Alkema, Wynand
Опубликовано 2012

Draft Genome Sequence of Lactobacillus delbrueckii subsp. bulgaricus LBB.B5

по Urshev, Zoltan, Hajo, Karima, Lenoci, Leonardo, Bron, Peter A., Dijkstra, Annereinou, Alkema, Wynand, Wels, Michiel, Siezen, Roland J., Minkova, Svetlana, van Hijum, Sacha A. F. T.
Опубликовано в: Genome Announc (2016)

Prednisolone-induced differential gene expression in mouse liver carrying wild type or a dimerization-defective glucocorticoid receptor

по Frijters, Raoul, Fleuren, Wilco, Toonen, Erik JM, Tuckermann, Jan P, Reichardt, Holger M, van der Maaden, Hans, van Elsas, Andrea, van Lierop, Marie-Jose, Dokter, Wim, de Vlieg, Jacob, Alkema, Wynand
Опубликовано 2010