Introducing the PRIDE Archive RESTful web services

Por Reisinger, Florian, del-Toro, Noemi, Ternent, Tobias, Hermjakob, Henning, Vizcaíno, Juan Antonio
Publicado no Nucleic Acids Res (2015)

ms-data-core-api: an open-source, metadata-oriented library for computational proteomics

Por Perez-Riverol, Yasset, Uszkoreit, Julian, Sanchez, Aniel, Ternent, Tobias, del Toro, Noemi, Hermjakob, Henning, Vizcaíno, Juan Antonio, Wang, Rui
Publicado no Bioinformatics (2015)

A new reference implementation of the PSICQUIC web service

Por del-Toro, Noemi, Dumousseau, Marine, Orchard, Sandra, Jimenez, Rafael C., Galeota, Eugenia, Launay, Guillaume, Goll, Johannes, Breuer, Karin, Ono, Keiichiro, Salwinski, Lukasz, Hermjakob, Henning
Publicado em 2013

Recognizing millions of consistently unidentified spectra across hundreds of shotgun proteomics datasets

Por Griss, Johannes, Perez-Riverol, Yasset, Lewis, Steve, Tabb, David L., Dianes, José A., del-Toro, Noemi, Rurik, Marc, Walzer, Mathias W., Kohlbacher, Oliver, Hermjakob, Henning, Wang, Rui, Vizcaíno, Juan Antonio
Publicado no Nat Methods (2016)

2016 update of the PRIDE database and its related tools

Por Vizcaíno, Juan Antonio, Csordas, Attila, del-Toro, Noemi, Dianes, José A., Griss, Johannes, Lavidas, Ilias, Mayer, Gerhard, Perez-Riverol, Yasset, Reisinger, Florian, Ternent, Tobias, Xu, Qing-Wei, Wang, Rui, Hermjakob, Henning
Publicado no Nucleic Acids Res (2016)

2016 update of the PRIDE database and its related tools

Por Vizcaíno, Juan Antonio, Csordas, Attila, del-Toro, Noemi, Dianes, José A., Griss, Johannes, Lavidas, Ilias, Mayer, Gerhard, Perez-Riverol, Yasset, Reisinger, Florian, Ternent, Tobias, Xu, Qing-Wei, Wang, Rui, Hermjakob, Henning
Publicado no Nucleic Acids Res (2016)

PRIDE Inspector Toolsuite: Moving Toward a Universal Visualization Tool for Proteomics Data Standard Formats and Quality Assessment of ProteomeXchange Datasets

Por Perez-Riverol, Yasset, Xu, Qing-Wei, Wang, Rui, Uszkoreit, Julian, Griss, Johannes, Sanchez, Aniel, Reisinger, Florian, Csordas, Attila, Ternent, Tobias, del-Toro, Noemi, Dianes, Jose A., Eisenacher, Martin, Hermjakob, Henning, Vizcaíno, Juan Antonio
Publicado no Mol Cell Proteomics (2016)

Detection of Missing Proteins Using the PRIDE Database as a Source of Mass Spectrometry Evidence

Por Garin-Muga, Alba, Odriozola, Leticia, Martínez-Val, Ana, del Toro, Noemí, Martínez, Rocío, Molina, Manuela, Cantero, Laura, Rivera, Rocío, Garrido, Nicolás, Dominguez, Francisco, Sanchez del Pino, Manuel M., Vizcaíno, Juan Antonio, Corrales, Fernando J., Segura, Victor
Publicado no J Proteome Res (2016)

BioJS: an open source JavaScript framework for biological data visualization

Por Gómez, John, García, Leyla J., Salazar, Gustavo A., Villaveces, Jose, Gore, Swanand, García, Alexander, Martín, Maria J., Launay, Guillaume, Alcántara, Rafael, del-Toro, Noemi, Dumousseau, Marine, Orchard, Sandra, Velankar, Sameer, Hermjakob, Henning, Zong, Chenggong, Ping, Peipei, Corpas, Manuel, Jiménez, Rafael C.
Publicado em 2013

The mzTab Data Exchange Format: Communicating Mass-spectrometry-based Proteomics and Metabolomics Experimental Results to a Wider Audience

Por Griss, Johannes, Jones, Andrew R., Sachsenberg, Timo, Walzer, Mathias, Gatto, Laurent, Hartler, Jürgen, Thallinger, Gerhard G., Salek, Reza M., Steinbeck, Christoph, Neuhauser, Nadin, Cox, Jürgen, Neumann, Steffen, Fan, Jun, Reisinger, Florian, Xu, Qing-Wei, del Toro, Noemi, Pérez-Riverol, Yasset, Ghali, Fawaz, Bandeira, Nuno, Xenarios, Ioannis, Kohlbacher, Oliver, Vizcaíno, Juan Antonio, Hermjakob, Henning
Publicado em 2014

The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases

Por Orchard, Sandra, Ammari, Mais, Aranda, Bruno, Breuza, Lionel, Briganti, Leonardo, Broackes-Carter, Fiona, Campbell, Nancy H., Chavali, Gayatri, Chen, Carol, del-Toro, Noemi, Duesbury, Margaret, Dumousseau, Marine, Galeota, Eugenia, Hinz, Ursula, Iannuccelli, Marta, Jagannathan, Sruthi, Jimenez, Rafael, Khadake, Jyoti, Lagreid, Astrid, Licata, Luana, Lovering, Ruth C., Meldal, Birgit, Melidoni, Anna N., Milagros, Mila, Peluso, Daniele, Perfetto, Livia, Porras, Pablo, Raghunath, Arathi, Ricard-Blum, Sylvie, Roechert, Bernd, Stutz, Andre, Tognolli, Michael, van Roey, Kim, Cesareni, Gianni, Hermjakob, Henning
Publicado em 2014

Discovering and Linking Public ‘Omics’ Datasets using the Omics Discovery Index

Por Perez-Riverol, Yasset, Bai, Mingze, da Veiga Leprevost, Felipe, Squizzato, Silvano, Park, Young Mi, Haug, Kenneth, Carroll, Adam J., Spalding, Dylan, Paschall, Justin, Wang, Mingxun, del-Toro, Noemi, Ternent, Tobias, Zhang, Peng, Buso, Nicola, Bandeira, Nuno, Deutsch, Eric W., Campbell, David S, Beavis, Ronald C., Salek, Reza M., Sarkans, Ugis, Petryszak, Robert, Keays, Maria, Fahy, Eoin, Sud, Manish, Subramaniam, Shankar, Barbera, Ariana, Jiménez, Rafael C., Nesvizhskii, Alexey I., Sansone, Susanna-Assunta, Steinbeck, Christoph, Lopez, Rodrigo, Vizcaíno, Juan Antonio, Ping, Peipei, Hermjakob, Henning
Publicado no Nat Biotechnol (2017)