ImmunoNodes – graphical development of complex immunoinformatics workflows

Por Schubert, Benjamin, de la Garza, Luis, Mohr, Christopher, Walzer, Mathias, Kohlbacher, Oliver
Publicado no BMC Bioinformatics (2017)

FRED 2: an immunoinformatics framework for Python

Por Schubert, Benjamin, Walzer, Mathias, Brachvogel, Hans-Philipp, Szolek, András, Mohr, Christopher, Kohlbacher, Oliver
Publicado no Bioinformatics (2016)

Workflows for automated downstream data analysis and visualization in large-scale computational mass spectrometry

Por Aiche, Stephan, Sachsenberg, Timo, Kenar, Erhan, Walzer, Mathias, Wiswedel, Bernd, Kristl, Theresa, Boyles, Matthew, Duschl, Albert, Huber, Christian G, Berthold, Michael R, Reinert, Knut, Kohlbacher, Oliver
Publicado no Proteomics (2015)

Recognizing millions of consistently unidentified spectra across hundreds of shotgun proteomics datasets

Por Griss, Johannes, Perez-Riverol, Yasset, Lewis, Steve, Tabb, David L., Dianes, José A., del-Toro, Noemi, Rurik, Marc, Walzer, Mathias W., Kohlbacher, Oliver, Hermjakob, Henning, Wang, Rui, Vizcaíno, Juan Antonio
Publicado no Nat Methods (2016)

The mzQuantML Data Standard for Mass Spectrometry–based Quantitative Studies in Proteomics([Image: see text])

Por Walzer, Mathias, Qi, Da, Mayer, Gerhard, Uszkoreit, Julian, Eisenacher, Martin, Sachsenberg, Timo, Gonzalez-Galarza, Faviel F., Fan, Jun, Bessant, Conrad, Deutsch, Eric W., Reisinger, Florian, Vizcaíno, Juan Antonio, Medina-Aunon, J. Alberto, Albar, Juan Pablo, Kohlbacher, Oliver, Jones, Andrew R.
Publicado em 2013

Proteomics Standards Initiative: Fifteen Years of Progress and Future Work

Por Deutsch, Eric W., Orchard, Sandra, Binz, Pierre-Alain, Bittremieux, Wout, Eisenacher, Martin, Hermjakob, Henning, Kawano, Shin, Lam, Henry, Mayer, Gerhard, Menschaert, Gerben, Perez-Riverol, Yasset, Salek, Reza M., Tabb, David L., Tenzer, Stefan, Vizcaíno, Juan Antonio, Walzer, Mathias, Jones, Andrew R.
Publicado no J Proteome Res (2017)

The mzIdentML Data Standard Version 1.2, Supporting Advances in Proteome Informatics

Por Vizcaíno, Juan Antonio, Mayer, Gerhard, Perkins, Simon, Barsnes, Harald, Vaudel, Marc, Perez-Riverol, Yasset, Ternent, Tobias, Uszkoreit, Julian, Eisenacher, Martin, Fischer, Lutz, Rappsilber, Juri, Netz, Eugen, Walzer, Mathias, Kohlbacher, Oliver, Leitner, Alexander, Chalkley, Robert J., Ghali, Fawaz, Martínez-Bartolomé, Salvador, Deutsch, Eric W., Jones, Andrew R.
Publicado no Mol Cell Proteomics (2017)

The mzTab Data Exchange Format: Communicating Mass-spectrometry-based Proteomics and Metabolomics Experimental Results to a Wider Audience

Por Griss, Johannes, Jones, Andrew R., Sachsenberg, Timo, Walzer, Mathias, Gatto, Laurent, Hartler, Jürgen, Thallinger, Gerhard G., Salek, Reza M., Steinbeck, Christoph, Neuhauser, Nadin, Cox, Jürgen, Neumann, Steffen, Fan, Jun, Reisinger, Florian, Xu, Qing-Wei, del Toro, Noemi, Pérez-Riverol, Yasset, Ghali, Fawaz, Bandeira, Nuno, Xenarios, Ioannis, Kohlbacher, Oliver, Vizcaíno, Juan Antonio, Hermjakob, Henning
Publicado em 2014

A community proposal to integrate proteomics activities in ELIXIR

Por Vizcaíno, Juan Antonio, Walzer, Mathias, Jiménez, Rafael C., Bittremieux, Wout, Bouyssié, David, Carapito, Christine, Corrales, Fernando, Ferro, Myriam, Heck, Albert J.R., Horvatovich, Peter, Hubalek, Martin, Lane, Lydie, Laukens, Kris, Levander, Fredrik, Lisacek, Frederique, Novak, Petr, Palmblad, Magnus, Piovesan, Damiano, Pühler, Alfred, Schwämmle, Veit, Valkenborg, Dirk, van Rijswijk, Merlijn, Vondrasek, Jiri, Eisenacher, Martin, Martens, Lennart, Kohlbacher, Oliver
Publicado no F1000Res (2017)

qcML: An Exchange Format for Quality Control Metrics from Mass Spectrometry Experiments

Por Walzer, Mathias, Pernas, Lucia Espona, Nasso, Sara, Bittremieux, Wout, Nahnsen, Sven, Kelchtermans, Pieter, Pichler, Peter, van den Toorn, Henk W. P., Staes, An, Vandenbussche, Jonathan, Mazanek, Michael, Taus, Thomas, Scheltema, Richard A., Kelstrup, Christian D., Gatto, Laurent, van Breukelen, Bas, Aiche, Stephan, Valkenborg, Dirk, Laukens, Kris, Lilley, Kathryn S., Olsen, Jesper V., Heck, Albert J. R., Mechtler, Karl, Aebersold, Ruedi, Gevaert, Kris, Vizcaíno, Juan Antonio, Hermjakob, Henning, Kohlbacher, Oliver, Martens, Lennart
Publicado em 2014