Bioinformatics Challenges and Solutions in Proteomics as Quantitative Methods Mature

par Jones, Andrew R.
Publié 2012

An analysis of extensible modelling for functional genomics data

par Jones, Andrew R, Paton, Norman W
Publié 2005

The jmzQuantML programming interface and validator for the mzQuantML data standard

par Qi, Da, Krishna, Ritesh, Jones, Andrew R
Publié 2014

Computational phosphoproteomics: From identification to localization

par Lee, Dave C H, Jones, Andrew R, Hubbard, Simon J
Publié dans Proteomics (2015)

Neopeptide Analyser: A software tool for neopeptide discovery in proteomics data

par Peffers, Mandy, Jones, Andrew R., McCabe, Antony, Anderson, James
Publié dans Wellcome Open Res (2017)

Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants

par Al-Momani, Shireen, Qi, Da, Ren, Zhe, Jones, Andrew R.
Publié dans J Proteomics (2018)

Allele frequency net: a database and online repository for immune gene frequencies in worldwide populations

par Gonzalez-Galarza, Faviel F., Christmas, Stephen, Middleton, Derek, Jones, Andrew R.
Publié 2011

VAPPER: High-throughput variant antigen profiling in African trypanosomes of livestock

par Silva Pereira, Sara, Heap, John, Jones, Andrew R, Jackson, Andrew P
Publié dans Gigascience (2019)

Improving sensitivity in proteome studies by analysis of false discovery rates for multiple search engines

par Jones, Andrew R., Siepen, Jennifer A., Hubbard, Simon J., Paton, Norman W.
Publié 2009

Critical assessment of approaches for molecular docking to elucidate associations of HLA alleles with adverse drug reactions

par Ramsbottom, Kerry A., Carr, Daniel F., Jones, Andrew R., Rigden, Daniel J.
Publié dans Mol Immunol (2018)

Informatics investigations into anti-thyroid drug induced agranulocytosis associated with multiple HLA-B alleles

par Ramsbottom, Kerry A., Carr, Daniel F., Rigden, Daniel J., Jones, Andrew R.
Publié dans PLoS One (2020)

A tutorial for software development in quantitative proteomics using PSI standard formats()

par Gonzalez-Galarza, Faviel F., Qi, Da, Fan, Jun, Bessant, Conrad, Jones, Andrew R.
Publié 2014

Allele Frequencies Database

par Takeshita, Louise Y.C., Jones, Andrew R., Gonzalez-Galarza, Faviel F., Middleton, Derek
Publié dans Transfus Med Hemother (2014)

mzMLb: A Future-Proof Raw Mass Spectrometry Data Format Based on Standards-Compliant mzML and Optimized for Speed and Storage Requirements

par Bhamber, Ranjeet S., Jankevics, Andris, Deutsch, Eric W., Jones, Andrew R., Dowsey, Andrew W.
Publié dans J Proteome Res (2020)

Capture and Analysis of Quantitative Proteomic Data

par Lau, King Wai, Jones, Andrew R, Swainston, Neil, Siepen, Jennifer A, Hubbard, Simon J
Publié 2007

Library of Apicomplexan Metabolic Pathways: a manually curated database for metabolic pathways of apicomplexan parasites

par Shanmugasundram, Achchuthan, Gonzalez-Galarza, Faviel F., Wastling, Jonathan M., Vasieva, Olga, Jones, Andrew R.
Publié 2013

An integrated approach to understand apicomplexan metabolism from their genomes

par Shanmugasundram, Achchuthan, Gonzalez-Galarza, Faviel F, Wastling, Jonathan M, Vasieva, Olga, Jones, Andrew R
Publié 2014

jmzTab: A Java interface to the mzTab data standard

par Xu, Qing-Wei, Griss, Johannes, Wang, Rui, Jones, Andrew R, Hermjakob, Henning, Vizcaíno, Juan Antonio
Publié dans Proteomics (2014)

FDRAnalysis: A tool for the integrated analysis of tandem mass spectrometry identification results from multiple search engines

par Wedge, David C, Krishna, Ritesh, Blackhurst, Paul, Siepen, Jennifer A, Jones, Andrew R., Hubbard, Simon J.
Publié 2011

Representation of selected-reaction monitoring data in the mzQuantML data standard

par Qi, Da, Lawless, Craig, Teleman, Johan, Levander, Fredrik, Holman, Stephen W, Hubbard, Simon, Jones, Andrew R
Publié dans Proteomics (2015)