Prediction of Missed Proteolytic Cleavages for the Selection of Surrogate Peptides for Quantitative Proteomics

Por Lawless, Craig, Hubbard, Simon J.
Publicado em 2012

Predicted transcription factor binding sites as predictors of operons in Escherichia coli and Streptomyces coelicolor

Por Laing, Emma, Sidhu, Khushwant, Hubbard, Simon J
Publicado em 2008

Addressing Statistical Biases in Nucleotide-Derived Protein Databases for Proteogenomic Search Strategies

Por Blakeley, Paul, Overton, Ian M., Hubbard, Simon J.
Publicado em 2012

SiteSeer: visualisation and analysis of transcription factor binding sites in nucleotide sequences

Por Boardman, Paul E., Oliver, Stephen G., Hubbard, Simon J.
Publicado em 2003

Characterising alternate splicing and tissue specific expression in the chicken from ESTs

Por Tang, Haizhou, Heeley, Thomas, Morlec, Raphael, Hubbard, Simon J
Publicado em 2007

Sequence Search Algorithms for Single Pass Sequence Identification: Does One Size Fit All?

Por Woodwark, K. Cara, Hubbard, Simon J., Oliver, Stephen G.
Publicado em 2001

Analysis of gene expression in operons of Streptomyces coelicolor

Por Laing, Emma, Mersinias, Vassilis, Smith, Colin P, Hubbard, Simon J
Publicado em 2006

A kingdom-specific protein domain HMM library for improved annotation of fungal genomes

Por Alam, Intikhab, Hubbard, Simon J, Oliver, Stephen G, Rattray, Magnus
Publicado em 2007

Investigating protein isoforms via proteomics: a feasibility study

Por Blakeley, Paul, Siepen, Jennifer A, Lawless, Craig, Hubbard, Simon J
Publicado em 2010

Computational phosphoproteomics: From identification to localization

Por Lee, Dave C H, Jones, Andrew R, Hubbard, Simon J
Publicado no Proteomics (2015)

Prediction of Missed Cleavage Sites in Tryptic Peptides Aids Protein Identification in Proteomics

Por Siepen, Jennifer A., Keevil, Emma-Jayne, Knight, David, Hubbard, Simon J.
Publicado em 2007

Improving sensitivity in proteome studies by analysis of false discovery rates for multiple search engines

Por Jones, Andrew R., Siepen, Jennifer A., Hubbard, Simon J., Paton, Norman W.
Publicado em 2009

Capture and Analysis of Quantitative Proteomic Data

Por Lau, King Wai, Jones, Andrew R, Swainston, Neil, Siepen, Jennifer A, Hubbard, Simon J
Publicado em 2007

Quantitative proteomics and network analysis of SSA1 and SSB1 deletion mutants reveals robustness of chaperone HSP70 network in Saccharomyces cerevisiae

Por Jarnuczak, Andrew F., Eyers, Claire E., Schwartz, Jean‐Marc, Grant, Christopher M., Hubbard, Simon J.
Publicado no Proteomics (2015)

FDRAnalysis: A tool for the integrated analysis of tandem mass spectrometry identification results from multiple search engines

Por Wedge, David C, Krishna, Ritesh, Blackhurst, Paul, Siepen, Jennifer A, Jones, Andrew R., Hubbard, Simon J.
Publicado em 2011

CONSeQuence: Prediction of Reference Peptides for Absolute Quantitative Proteomics Using Consensus Machine Learning Approaches

Por Eyers, Claire E., Lawless, Craig, Wedge, David C., Lau, King Wai, Gaskell, Simon J., Hubbard, Simon J.
Publicado em 2011

An informatic pipeline for the data capture and submission of quantitative proteomic data using iTRAQ(TM)

Por Siepen, Jennifer A, Swainston, Neil, Jones, Andrew R, Hart, Sarah R, Hermjakob, Henning, Jones, Philip, Hubbard, Simon J
Publicado em 2007

A Critical Appraisal of Techniques, Software Packages, and Standards for Quantitative Proteomic Analysis

Por Gonzalez-Galarza, Faviel F., Lawless, Craig, Hubbard, Simon J., Fan, Jun, Bessant, Conrad, Hermjakob, Henning, Jones, Andrew R.
Publicado em 2012

PepSeeker: a database of proteome peptide identifications for investigating fragmentation patterns

Por McLaughlin, Thomas, Siepen, Jennifer A., Selley, Julian, Lynch, Jennifer A., Lau, King Wai, Yin, Hujun, Gaskell, Simon J., Hubbard, Simon J.
Publicado em 2006

Absolute protein quantification of the yeast chaperome under conditions of heat shock

Por Mackenzie, Rebecca J., Lawless, Craig, Holman, Stephen W., Lanthaler, Karin, Beynon, Robert J., Grant, Chris M., Hubbard, Simon J., Eyers, Claire E.
Publicado no Proteomics (2016)