NETTAB 2012 on "Integrated Bio-Search"

Por Romano, Paolo, Lisacek, Frédérique, Masseroli, Marco
Publicado em 2014

Property Graph vs RDF Triple Store: A Comparison on Glycan Substructure Search

Por Alocci, Davide, Mariethoz, Julien, Horlacher, Oliver, Bolleman, Jerven T., Campbell, Matthew P., Lisacek, Frederique
Publicado no PLoS One (2015)

Glycation Isotopic Labeling with (13)C-Reducing Sugars for Quantitative Analysis of Glycated Proteins in Human Plasma

Por Priego-Capote, Feliciano, Scherl, Alexander, Müller, Markus, Waridel, Patrice, Lisacek, Frédérique, Sanchez, Jean-Charles
Publicado em 2010

pROC: an open-source package for R and S+ to analyze and compare ROC curves

Por Robin, Xavier, Turck, Natacha, Hainard, Alexandre, Tiberti, Natalia, Lisacek, Frédérique, Sanchez, Jean-Charles, Müller, Markus
Publicado em 2011

Image analysis tools and emerging algorithms for expression proteomics

Por Dowsey, Andrew W., English, Jane A., Lisacek, Frederique, Morris, Jeffrey S., Yang, Guang-Zhong, Dunn, Michael J.
Publicado em 2010

ConoDictor: a tool for prediction of conopeptide superfamilies

Por Koua, Dominique, Brauer, Age, Laht, Silja, Kaplinski, Lauris, Favreau, Philippe, Remm, Maido, Lisacek, Frédérique, Stöcklin, Reto
Publicado em 2012

Optimization of human dendritic cell sample preparation for mass spectrometry-based proteomics studies

Por Zhang, Ying, Bottinelli, Dario, Lisacek, Frédérique, Luban, Jeremy, De Castillia, Caterina Strambio, Varesio, Emmanuel, Hopfgartner, Gérard
Publicado no Anal Biochem (2015)

Ranking Fragment Ions Based on Outlier Detection for Improved Label-Free Quantification in Data-Independent Acquisition LC-MS/MS

Por Bilbao, Aivett, Zhang, Ying, Varesio, Emmanuel, Luban, Jeremy, Strambio-De-Castillia, Caterina, Lisacek, Frédérique, Hopfgartner, Gérard
Publicado no J Proteome Res (2015)

Integrated Bio-Search: challenges and trends for the integration, search and comprehensive processing of biological information

Por Masseroli, Marco, Mons, Barend, Bongcam-Rudloff, Erik, Ceri, Stefano, Kel, Alexander, Rechenmann, François, Lisacek, Frederique, Romano, Paolo
Publicado em 2014

Comparative Proteomic Profiling of Ehrlichia ruminantium Pathogenic Strain and Its High-Passaged Attenuated Strain Reveals Virulence and Attenuation-Associated Proteins

Por Marcelino, Isabel, Ventosa, Miguel, Pires, Elisabete, Müller, Markus, Lisacek, Frédérique, Lefrançois, Thierry, Vachiery, Nathalie, Coelho, Ana Varela
Publicado no PLoS One (2015)

UniCarbKB: building a knowledge platform for glycoproteomics

Por Campbell, Matthew P., Peterson, Robyn, Mariethoz, Julien, Gasteiger, Elisabeth, Akune, Yukie, Aoki-Kinoshita, Kiyoko F., Lisacek, Frederique, Packer, Nicolle H.
Publicado em 2014

SugarBindDB, a resource of glycan-mediated host–pathogen interactions

Por Mariethoz, Julien, Khatib, Khaled, Alocci, Davide, Campbell, Matthew P., Karlsson, Niclas G., Packer, Nicolle H., Mullen, Elaine H., Lisacek, Frederique
Publicado no Nucleic Acids Res (2016)

GlycoDigest: a tool for the targeted use of exoglycosidase digestions in glycan structure determination

Por Gotz, Lou, Abrahams, Jodie L., Mariethoz, Julien, Rudd, Pauline M., Karlsson, Niclas G., Packer, Nicolle H., Campbell, Matthew P., Lisacek, Frederique
Publicado no Bioinformatics (2014)

Pathway analysis and transcriptomics improve protein identification by shotgun proteomics from samples comprising small number of cells - a benchmarking study

Por Sun, Jing, Zhang, Guang Lan, Li, Siyang, Ivanov, Alexander R, Fenyo, David, Lisacek, Frederique, Murthy, Shashi K, Karger, Barry L, Brusic, Vladimir
Publicado no BMC Genomics (2014)

Peptidomic and transcriptomic profiling of four distinct spider venoms

Por Oldrati, Vera, Koua, Dominique, Allard, Pierre-Marie, Hulo, Nicolas, Arrell, Miriam, Nentwig, Wolfgang, Lisacek, Frédérique, Wolfender, Jean-Luc, Kuhn-Nentwig, Lucia, Stöcklin, Reto
Publicado no PLoS One (2017)

A Combined CXCL10, CXCL8 and H-FABP Panel for the Staging of Human African Trypanosomiasis Patients

Por Hainard, Alexandre, Tiberti, Natalia, Robin, Xavier, Lejon, Veerle, Ngoyi, Dieudonné Mumba, Matovu, Enock, Enyaru, John Charles, Fouda, Catherine, Ndung'u, Joseph Mathu, Lisacek, Frédérique, Müller, Markus, Turck, Natacha, Sanchez, Jean-Charles
Publicado em 2009

Toolboxes for a standardised and systematic study of glycans

Por Campbell, Matthew P, Ranzinger, René, Lütteke, Thomas, Mariethoz, Julien, Hayes, Catherine A, Zhang, Jingyu, Akune, Yukie, Aoki-Kinoshita, Kiyoko F, Damerell, David, Carta, Giorgio, York, Will S, Haslam, Stuart M, Narimatsu, Hisashi, Rudd, Pauline M, Karlsson, Niclas G, Packer, Nicolle H, Lisacek, Frédérique
Publicado em 2014

Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support

Por Stockinger, Heinz, Altenhoff, Adrian M., Arnold, Konstantin, Bairoch, Amos, Bastian, Frederic, Bergmann, Sven, Bougueleret, Lydie, Bucher, Philipp, Delorenzi, Mauro, Lane, Lydie, Mercier, Philippe Le, Lisacek, Frédérique, Michielin, Olivier, Palagi, Patricia M., Rougemont, Jacques, Schwede, Torsten, von Mering, Christian, van Nimwegen, Erik, Walther, Daniel, Xenarios, Ioannis, Zavolan, Mihaela, Zdobnov, Evgeny M., Zoete, Vincent, Appel, Ron D.
Publicado em 2014