Big Data Analytics in Immunology: A Knowledge-Based Approach

av Zhang, Guang Lan, Sun, Jing, Chitkushev, Lou, Brusic, Vladimir
Publicerad 2014

FLAVIdB: A data mining system for knowledge discovery in flaviviruses with direct applications in immunology and vaccinology

av Olsen, Lars Rønn, Zhang, Guang Lan, Reinherz, Ellis L., Brusic, Vladimir
I publikationen Immunome Res (2011)

PRED(BALB/c): a system for the prediction of peptide binding to H2(d) molecules, a haplotype of the BALB/c mouse

av Zhang, Guang Lan, Srinivasan, Kellathur N., Veeramani, Anitha, August, J. Thomas, Brusic, Vladimir
Publicerad 2005

PRED(TAP): a system for prediction of peptide binding to the human transporter associated with antigen processing

av Zhang, Guang Lan, Petrovsky, Nikolai, Kwoh, Chee Keong, August, J Thomas, Brusic, Vladimir
Publicerad 2006

Evaluation of MHC-II peptide binding prediction servers: applications for vaccine research

av Lin, Hong Huang, Zhang, Guang Lan, Tongchusak, Songsak, Reinherz, Ellis L, Brusic, Vladimir
Publicerad 2008

Prediction of supertype-specific HLA class I binding peptides using support vector machines

av Zhang, Guang Lan, Bozic, Ivana, Kwoh, Chee Keong, August, J. Thomas, Brusic, Vladimir
Publicerad 2007

MULTIPRED: a computational system for prediction of promiscuous HLA binding peptides

av Zhang, Guang Lan, Khan, Asif M., Srinivasan, Kellathur N., August, J. Thomas, Brusic, Vladimir
Publicerad 2005

Dana-Farber Repository for Machine Learning in Immunology

av Zhang, Guang Lan, Lin, Hong Huang, Keskin, Derin B., Reinherz, Ellis L., Brusic, Vladimir
Publicerad 2011

PB1-F2 Finder: scanning influenza sequences for PB1-F2 encoding RNA segments

av DeLuca, David S, Keskin, Derin B, Zhang, Guang Lan, Reinherz, Ellis L, Brusic, Vladimir
Publicerad 2011

Conservation Analysis of Dengue Virus T-cell Epitope-Based Vaccine Candidates Using Peptide Block Entropy

av Olsen, Lars Rønn, Zhang, Guang Lan, Keskin, Derin B., Reinherz, Ellis L., Brusic, Vladimir
Publicerad 2011

HPVdb: a data mining system for knowledge discovery in human papillomavirus with applications in T cell immunology and vaccinology

av Zhang, Guang Lan, Riemer, Angelika B., Keskin, Derin B., Chitkushev, Lou, Reinherz, Ellis L., Brusic, Vladimir
Publicerad 2014

Physical detection of influenza A epitopes identifies a stealth subset on human lung epithelium evading natural CD8 immunity

av Keskin, Derin B., Reinhold, Bruce B., Zhang, Guang Lan, Ivanov, Alexander R., Karger, Barry L., Reinherz, Ellis L.
I publikationen Proc Natl Acad Sci U S A (2015)

Reply to van de Sandt and Rimmelzwaan: Matching epitope display with functional avidity

av Keskin, Derin B., Reinhold, Bruce R., Zhang, Guang Lan, Ivanov, Alexander R., Karger, Barry L., Reinherz, Ellis L.
I publikationen Proc Natl Acad Sci U S A (2015)

FluKB: A Knowledge-Based System for Influenza Vaccine Target Discovery and Analysis of the Immunological Properties of Influenza Viruses

av Simon, Christian, Kudahl, Ulrich J., Sun, Jing, Olsen, Lars Rønn, Zhang, Guang Lan, Reinherz, Ellis L., Brusic, Vladimir
I publikationen J Immunol Res (2015)

Hotspot Hunter: a computational system for large-scale screening and selection of candidate immunological hotspots in pathogen proteomes

av Zhang, Guang Lan, Khan, Asif M, Srinivasan, Kellathur N, Heiny, AT, Lee, KX, Kwoh, Chee Keong, August, J Thomas, Brusic, Vladimir
Publicerad 2008

MULTIPRED2: A computational system for large-scale identification of peptides predicted to bind to HLA supertypes and alleles

av Zhang, Guang Lan, DeLuca, David S., Keskin, Derin B., Chitkushev, Lou, Zlateva, Tanya, Lund, Ole, Reinherz, Ellis L., Brusic, Vladimir
Publicerad 2011

BlockLogo: visualization of peptide and sequence motif conservation

av Olsen, Lars Rønn, Kudahl, Ulrich Johan, Simon, Christian, Sun, Jing, Schönbach, Christian, Reinherz, Ellis L., Zhang, Guang Lan, Brusic, Vladimir
Publicerad 2013

Pathway analysis and transcriptomics improve protein identification by shotgun proteomics from samples comprising small number of cells - a benchmarking study

av Sun, Jing, Zhang, Guang Lan, Li, Siyang, Ivanov, Alexander R, Fenyo, David, Lisacek, Frederique, Murthy, Shashi K, Karger, Barry L, Brusic, Vladimir
I publikationen BMC Genomics (2014)

Human Leukocyte Antigen Typing Using a Knowledge Base Coupled with a High-Throughput Oligonucleotide Probe Array Analysis

av Zhang, Guang Lan, Keskin, Derin B., Lin, Hsin-Nan, Lin, Hong Huang, DeLuca, David S., Leppanen, Scott, Milford, Edgar L., Reinherz, Ellis L., Brusic, Vladimir
I publikationen Front Immunol (2014)

Conservation and Variability of Dengue Virus Proteins: Implications for Vaccine Design

av Khan, Asif M., Miotto, Olivo, Nascimento, Eduardo J. M., Srinivasan, K. N., Heiny, A. T., Zhang, Guang Lan, Marques, E. T., Tan, Tin Wee, Brusic, Vladimir, Salmon, Jerome, August, J. Thomas
Publicerad 2008