Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana

Por Laubinger, Sascha, Sachsenberg, Timo, Zeller, Georg, Busch, Wolfgang, Lohmann, Jan U., Rätsch, Gunnar, Weigel, Detlef
Publicado em 2008

Dithiothreitol (DTT) Acts as a Specific, UV-inducible Cross-linker in Elucidation of Protein–RNA Interactions

Por Zaman, Uzma, Richter, Florian M., Hofele, Romina, Kramer, Katharina, Sachsenberg, Timo, Kohlbacher, Oliver, Lenz, Christof, Urlaub, Henning
Publicado no Mol Cell Proteomics (2015)

Global effects of the small RNA biogenesis machinery on the Arabidopsis thaliana transcriptome

Por Laubinger, Sascha, Zeller, Georg, Henz, Stefan R., Buechel, Sabine, Sachsenberg, Timo, Wang, Jia-Wei, Rätsch, Gunnar, Weigel, Detlef
Publicado em 2010

At-TAX: a whole genome tiling array resource for developmental expression analysis and transcript identification in Arabidopsis thaliana

Por Laubinger, Sascha, Zeller, Georg, Henz, Stefan R, Sachsenberg, Timo, Widmer, Christian K, Naouar, Naïra, Vuylsteke, Marnik, Schölkopf, Bernhard, Rätsch, Gunnar, Weigel, Detlef
Publicado em 2008

Workflows for automated downstream data analysis and visualization in large-scale computational mass spectrometry

Por Aiche, Stephan, Sachsenberg, Timo, Kenar, Erhan, Walzer, Mathias, Wiswedel, Bernd, Kristl, Theresa, Boyles, Matthew, Duschl, Albert, Huber, Christian G, Berthold, Michael R, Reinert, Knut, Kohlbacher, Oliver
Publicado no Proteomics (2015)

Ten Simple Rules for Taking Advantage of Git and GitHub

Por Perez-Riverol, Yasset, Gatto, Laurent, Wang, Rui, Sachsenberg, Timo, Uszkoreit, Julian, Leprevost, Felipe da Veiga, Fufezan, Christian, Ternent, Tobias, Eglen, Stephen J., Katz, Daniel S., Pollard, Tom J., Konovalov, Alexander, Flight, Robert M., Blin, Kai, Vizcaíno, Juan Antonio
Publicado no PLoS Comput Biol (2016)

The mzQuantML Data Standard for Mass Spectrometry–based Quantitative Studies in Proteomics([Image: see text])

Por Walzer, Mathias, Qi, Da, Mayer, Gerhard, Uszkoreit, Julian, Eisenacher, Martin, Sachsenberg, Timo, Gonzalez-Galarza, Faviel F., Fan, Jun, Bessant, Conrad, Deutsch, Eric W., Reisinger, Florian, Vizcaíno, Juan Antonio, Medina-Aunon, J. Alberto, Albar, Juan Pablo, Kohlbacher, Oliver, Jones, Andrew R.
Publicado em 2013

BioContainers: an open-source and community-driven framework for software standardization

Por da Veiga Leprevost, Felipe, Grüning, Björn A, Alves Aflitos, Saulo, Röst, Hannes L, Uszkoreit, Julian, Barsnes, Harald, Vaudel, Marc, Moreno, Pablo, Gatto, Laurent, Weber, Jonas, Bai, Mingze, Jimenez, Rafael C, Sachsenberg, Timo, Pfeuffer, Julianus, Vera Alvarez, Roberto, Griss, Johannes, Nesvizhskii, Alexey I, Perez-Riverol, Yasset
Publicado no Bioinformatics (2017)

The mzTab Data Exchange Format: Communicating Mass-spectrometry-based Proteomics and Metabolomics Experimental Results to a Wider Audience

Por Griss, Johannes, Jones, Andrew R., Sachsenberg, Timo, Walzer, Mathias, Gatto, Laurent, Hartler, Jürgen, Thallinger, Gerhard G., Salek, Reza M., Steinbeck, Christoph, Neuhauser, Nadin, Cox, Jürgen, Neumann, Steffen, Fan, Jun, Reisinger, Florian, Xu, Qing-Wei, del Toro, Noemi, Pérez-Riverol, Yasset, Ghali, Fawaz, Bandeira, Nuno, Xenarios, Ioannis, Kohlbacher, Oliver, Vizcaíno, Juan Antonio, Hermjakob, Henning
Publicado em 2014