Ground state conditions induce rapid reorganization of core pluripotency factor binding before global epigenetic reprogramming

Bằng Galonska, Christina, Ziller, Michael J., Karnik, Rahul, Meissner, Alexander
Xuất bản năm Cell Stem Cell (2015)

Coverage recommendations for methylation analysis by whole genome bisulfite sequencing

Bằng Ziller, Michael J., Hansen, Kasper D., Meissner, Alexander, Aryee, Martin J.
Xuất bản năm Nat Methods (2014)

Targeted bisulfite sequencing of the dynamic DNA methylome

Bằng Ziller, Michael J., Stamenova, Elena K., Gu, Hongcang, Gnirke, Andreas, Meissner, Alexander
Xuất bản năm Epigenetics Chromatin (2016)

Transcription factor binding dynamics during human ESC differentiation

Bằng Tsankov, Alexander M., Gu, Hongcang, Akopian, Veronika, Ziller, Michael J., Donaghey, Julie, Amit, Ido, Gnirke, Andreas, Meissner, Alexander
Xuất bản năm Nature (2015)

Single-Cell RNA-Sequencing-Based CRISPRi Screening Resolves Molecular Drivers of Early Human Endoderm Development

Bằng Genga, Ryan M.J., Kernfeld, Eric M., Parsi, Krishna M., Parsons, Teagan J., Ziller, Michael J., Maehr, René
Xuất bản năm Cell Rep (2019)

Modeling metabolic networks in C. glutamicum: a comparison of rate laws in combination with various parameter optimization strategies

Bằng Dräger, Andreas, Kronfeld, Marcel, Ziller, Michael J, Supper, Jochen, Planatscher, Hannes, Magnus, Jørgen B, Oldiges, Marco, Kohlbacher, Oliver, Zell, Andreas
Được phát hành 2009

The systems biology simulation core algorithm

Bằng Keller, Roland, Dörr, Alexander, Tabira, Akito, Funahashi, Akira, Ziller, Michael J, Adams, Richard, Rodriguez, Nicolas, Novère, Nicolas Le, Hiroi, Noriko, Planatscher, Hannes, Zell, Andreas, Dräger, Andreas
Được phát hành 2013

Genomic Distribution and Inter-Sample Variation of Non-CpG Methylation across Human Cell Types

Bằng Ziller, Michael J., Müller, Fabian, Liao, Jing, Zhang, Yingying, Gu, Hongcang, Bock, Christoph, Boyle, Patrick, Epstein, Charles B., Bernstein, Bradley E., Lengauer, Thomas, Gnirke, Andreas, Meissner, Alexander
Được phát hành 2011

Analysing human neural stem cell ontogeny by consecutive isolation of Notch active neural progenitors

Bằng Edri, Reuven, Yaffe, Yakey, Ziller, Michael J., Mutukula, Naresh, Volkman, Rotem, David, Eyal, Jacob-Hirsch, Jasmine, Malcov, Hagar, Levy, Carmit, Rechavi, Gideon, Gat-Viks, Irit, Meissner, Alexander, Elkabetz, Yechiel
Xuất bản năm Nat Commun (2015)

Charting a dynamic DNA methylation landscape of the human genome

Bằng Ziller, Michael J., Gu, Hongcang, Müller, Fabian, Donaghey, Julie, Tsai, Linus T.-Y., Kohlbacher, Oliver, De Jager, Phil L., Rosen, Evan D., Bennett, David A., Bernstein, Bradley E., Gnirke, Andreas, Meissner, Alexander
Được phát hành 2013

Information recovery from low coverage whole-genome bisulfite sequencing

Bằng Libertini, Emanuele, Heath, Simon C., Hamoudi, Rifat A., Gut, Marta, Ziller, Michael J., Czyz, Agata, Ruotti, Victor, Stunnenberg, Hendrik G., Frontini, Mattia, Ouwehand, Willem H., Meissner, Alexander, Gut, Ivo G., Beck, Stephan
Xuất bản năm Nat Commun (2016)

Genetic and epigenetic variation, but not diet, shape the sperm methylome

Bằng Shea, Jeremy M., Serra, Ryan W., Carone, Benjamin R., Shulha, Hennady P., Kucukural, Alper, Ziller, Michael J., Vallaster, Markus P., Gu, Hongcang, Tapper, Andrew R., Gardner, Paul D., Meissner, Alexander, Garber, Manuel, Rando, Oliver J.
Xuất bản năm Dev Cell (2015)

Global delay in nascent strand DNA methylation

Bằng Charlton, Jocelyn, Downing, Timothy L., Smith, Zachary D., Gu, Hongcang, Clement, Kendell, Pop, Ramona, Akopian, Veronika, Klages, Sven, Santos, David P., Tsankov, Alexander M., Timmermann, Bernd, Ziller, Michael J., Kiskinis, Evangelos, Gnirke, Andreas, Meissner, Alexander
Xuất bản năm Nat Struct Mol Biol (2018)

Epigenomics and chromatin dynamics

Bằng Akopian, Veronika, Chan, Michelle M, Clement, Kendell, Galonska, Christina, Gifford, Casey A, Lehtola, Elizabeth, Liao, Jing, Samavarchi-Tehrani, Payman, Sindhu, Camille, Smith, Zachary D, Tsankov, Alexander M, Webster, Jamie, Zhang, Yingying, Ziller, Michael J, Meissner, Alexander
Được phát hành 2012

Epigenetic Memory Underlies Cell-Autonomous Heterogeneous Behavior of Hematopoietic Stem Cells

Bằng Yu, Vionnie W.C., Yusuf, Rushdia Z., Oki, Toshihiko, Wu, Juwell, Saez, Borja, Wang, Xin, Cook, Colleen, Baryawno, Ninib, Ziller, Michael J., Lee, Eunjung, Gu, Hongcang, Meissner, Alexander, Lin, Charles P., Kharchenko, Peter V., Scadden, David T.
Xuất bản năm Cell (2017)

Genome-wide tracking of dCas9-methyltransferase footprints

Bằng Galonska, Christina, Charlton, Jocelyn, Mattei, Alexandra L., Donaghey, Julie, Clement, Kendell, Gu, Hongcang, Mohammad, Arman W., Stamenova, Elena K., Cacchiarelli, Davide, Klages, Sven, Timmermann, Bernd, Cantz, Tobias, Schöler, Hans R., Gnirke, Andreas, Ziller, Michael J., Meissner, Alexander
Xuất bản năm Nat Commun (2018)

Genetic determinants and epigenetic effects of pioneer factor occupancy

Bằng Donaghey, Julie, Thakurela, Sudhir, Charlton, Jocelyn, Chen, Jennifer, Smith, Zachary D., Gu, Hongcang, Pop, Ramona, Clement, Kendell, Stamenova, Elena, Karnik, Rahul, Kelley, David R., Gifford, Casey A., Cacchiarelli, Davide, Rinn, John L., Gnirke, Andreas, Ziller, Michael J., Meissner, Alexander
Xuất bản năm Nat Genet (2018)

Dissecting the Functional Consequences of de Novo DNA Methylation Dynamics in Human Motor Neuron Differentiation and Physiology

Bằng Ziller, Michael J., Ortega, Juan A., Quinlan, Katharina A., Santos, David P., Gu, Hongcang, Martin, Eric J., Galonska, Christina, Pop, Ramona, Maidl, Susanne, Di Pardo, Alba, Huang, Mei, Meltzer, Herbert Y., Gnirke, Andreas, Heckman, CJ, Meissner, Alexander, Kiskinis, Evangelos
Xuất bản năm Cell Stem Cell (2018)

A stably self-renewing adult blood-derived induced neural stem cell exhibiting patternability and epigenetic rejuvenation

Bằng Sheng, Chao, Jungverdorben, Johannes, Wiethoff, Hendrik, Lin, Qiong, Flitsch, Lea J., Eckert, Daniela, Hebisch, Matthias, Fischer, Julia, Kesavan, Jaideep, Weykopf, Beatrice, Schneider, Linda, Holtkamp, Dominik, Beck, Heinz, Till, Andreas, Wüllner, Ullrich, Ziller, Michael J., Wagner, Wolfgang, Peitz, Michael, Brüstle, Oliver
Xuất bản năm Nat Commun (2018)

Targeted disruption of DNMT1, DNMT3A and DNMT3B in human embryonic stem cells

Bằng Liao, Jing, Karnik, Rahul, Gu, Hongcang, Ziller, Michael J., Clement, Kendell, Tsankov, Alexander M., Akopian, Veronika, Gifford, Casey A., Donaghey, Julie, Galonska, Christina, Pop, Ramona, Reyon, Deepak, Tsai, Shengdar Q., Mallard, William, Joung, J. Keith, Rinn, John L., Gnirke, Andreas, Meissner, Alexander
Xuất bản năm Nat Genet (2015)