Ground state conditions induce rapid reorganization of core pluripotency factor binding before global epigenetic reprogramming

מאת Galonska, Christina, Ziller, Michael J., Karnik, Rahul, Meissner, Alexander
הוצא לאור ב Cell Stem Cell (2015)

Coverage recommendations for methylation analysis by whole genome bisulfite sequencing

מאת Ziller, Michael J., Hansen, Kasper D., Meissner, Alexander, Aryee, Martin J.
הוצא לאור ב Nat Methods (2014)

Targeted bisulfite sequencing of the dynamic DNA methylome

מאת Ziller, Michael J., Stamenova, Elena K., Gu, Hongcang, Gnirke, Andreas, Meissner, Alexander
הוצא לאור ב Epigenetics Chromatin (2016)

Transcription factor binding dynamics during human ESC differentiation

מאת Tsankov, Alexander M., Gu, Hongcang, Akopian, Veronika, Ziller, Michael J., Donaghey, Julie, Amit, Ido, Gnirke, Andreas, Meissner, Alexander
הוצא לאור ב Nature (2015)

Single-Cell RNA-Sequencing-Based CRISPRi Screening Resolves Molecular Drivers of Early Human Endoderm Development

מאת Genga, Ryan M.J., Kernfeld, Eric M., Parsi, Krishna M., Parsons, Teagan J., Ziller, Michael J., Maehr, René
הוצא לאור ב Cell Rep (2019)

Modeling metabolic networks in C. glutamicum: a comparison of rate laws in combination with various parameter optimization strategies

מאת Dräger, Andreas, Kronfeld, Marcel, Ziller, Michael J, Supper, Jochen, Planatscher, Hannes, Magnus, Jørgen B, Oldiges, Marco, Kohlbacher, Oliver, Zell, Andreas
יצא לאור 2009

The systems biology simulation core algorithm

מאת Keller, Roland, Dörr, Alexander, Tabira, Akito, Funahashi, Akira, Ziller, Michael J, Adams, Richard, Rodriguez, Nicolas, Novère, Nicolas Le, Hiroi, Noriko, Planatscher, Hannes, Zell, Andreas, Dräger, Andreas
יצא לאור 2013

Genomic Distribution and Inter-Sample Variation of Non-CpG Methylation across Human Cell Types

מאת Ziller, Michael J., Müller, Fabian, Liao, Jing, Zhang, Yingying, Gu, Hongcang, Bock, Christoph, Boyle, Patrick, Epstein, Charles B., Bernstein, Bradley E., Lengauer, Thomas, Gnirke, Andreas, Meissner, Alexander
יצא לאור 2011

Analysing human neural stem cell ontogeny by consecutive isolation of Notch active neural progenitors

מאת Edri, Reuven, Yaffe, Yakey, Ziller, Michael J., Mutukula, Naresh, Volkman, Rotem, David, Eyal, Jacob-Hirsch, Jasmine, Malcov, Hagar, Levy, Carmit, Rechavi, Gideon, Gat-Viks, Irit, Meissner, Alexander, Elkabetz, Yechiel
הוצא לאור ב Nat Commun (2015)

Charting a dynamic DNA methylation landscape of the human genome

מאת Ziller, Michael J., Gu, Hongcang, Müller, Fabian, Donaghey, Julie, Tsai, Linus T.-Y., Kohlbacher, Oliver, De Jager, Phil L., Rosen, Evan D., Bennett, David A., Bernstein, Bradley E., Gnirke, Andreas, Meissner, Alexander
יצא לאור 2013

Information recovery from low coverage whole-genome bisulfite sequencing

מאת Libertini, Emanuele, Heath, Simon C., Hamoudi, Rifat A., Gut, Marta, Ziller, Michael J., Czyz, Agata, Ruotti, Victor, Stunnenberg, Hendrik G., Frontini, Mattia, Ouwehand, Willem H., Meissner, Alexander, Gut, Ivo G., Beck, Stephan
הוצא לאור ב Nat Commun (2016)

Genetic and epigenetic variation, but not diet, shape the sperm methylome

מאת Shea, Jeremy M., Serra, Ryan W., Carone, Benjamin R., Shulha, Hennady P., Kucukural, Alper, Ziller, Michael J., Vallaster, Markus P., Gu, Hongcang, Tapper, Andrew R., Gardner, Paul D., Meissner, Alexander, Garber, Manuel, Rando, Oliver J.
הוצא לאור ב Dev Cell (2015)

Global delay in nascent strand DNA methylation

מאת Charlton, Jocelyn, Downing, Timothy L., Smith, Zachary D., Gu, Hongcang, Clement, Kendell, Pop, Ramona, Akopian, Veronika, Klages, Sven, Santos, David P., Tsankov, Alexander M., Timmermann, Bernd, Ziller, Michael J., Kiskinis, Evangelos, Gnirke, Andreas, Meissner, Alexander
הוצא לאור ב Nat Struct Mol Biol (2018)

Epigenomics and chromatin dynamics

מאת Akopian, Veronika, Chan, Michelle M, Clement, Kendell, Galonska, Christina, Gifford, Casey A, Lehtola, Elizabeth, Liao, Jing, Samavarchi-Tehrani, Payman, Sindhu, Camille, Smith, Zachary D, Tsankov, Alexander M, Webster, Jamie, Zhang, Yingying, Ziller, Michael J, Meissner, Alexander
יצא לאור 2012

Epigenetic Memory Underlies Cell-Autonomous Heterogeneous Behavior of Hematopoietic Stem Cells

מאת Yu, Vionnie W.C., Yusuf, Rushdia Z., Oki, Toshihiko, Wu, Juwell, Saez, Borja, Wang, Xin, Cook, Colleen, Baryawno, Ninib, Ziller, Michael J., Lee, Eunjung, Gu, Hongcang, Meissner, Alexander, Lin, Charles P., Kharchenko, Peter V., Scadden, David T.
הוצא לאור ב Cell (2017)

Genome-wide tracking of dCas9-methyltransferase footprints

מאת Galonska, Christina, Charlton, Jocelyn, Mattei, Alexandra L., Donaghey, Julie, Clement, Kendell, Gu, Hongcang, Mohammad, Arman W., Stamenova, Elena K., Cacchiarelli, Davide, Klages, Sven, Timmermann, Bernd, Cantz, Tobias, Schöler, Hans R., Gnirke, Andreas, Ziller, Michael J., Meissner, Alexander
הוצא לאור ב Nat Commun (2018)

Genetic determinants and epigenetic effects of pioneer factor occupancy

מאת Donaghey, Julie, Thakurela, Sudhir, Charlton, Jocelyn, Chen, Jennifer, Smith, Zachary D., Gu, Hongcang, Pop, Ramona, Clement, Kendell, Stamenova, Elena, Karnik, Rahul, Kelley, David R., Gifford, Casey A., Cacchiarelli, Davide, Rinn, John L., Gnirke, Andreas, Ziller, Michael J., Meissner, Alexander
הוצא לאור ב Nat Genet (2018)

Dissecting the Functional Consequences of de Novo DNA Methylation Dynamics in Human Motor Neuron Differentiation and Physiology

מאת Ziller, Michael J., Ortega, Juan A., Quinlan, Katharina A., Santos, David P., Gu, Hongcang, Martin, Eric J., Galonska, Christina, Pop, Ramona, Maidl, Susanne, Di Pardo, Alba, Huang, Mei, Meltzer, Herbert Y., Gnirke, Andreas, Heckman, CJ, Meissner, Alexander, Kiskinis, Evangelos
הוצא לאור ב Cell Stem Cell (2018)

A stably self-renewing adult blood-derived induced neural stem cell exhibiting patternability and epigenetic rejuvenation

מאת Sheng, Chao, Jungverdorben, Johannes, Wiethoff, Hendrik, Lin, Qiong, Flitsch, Lea J., Eckert, Daniela, Hebisch, Matthias, Fischer, Julia, Kesavan, Jaideep, Weykopf, Beatrice, Schneider, Linda, Holtkamp, Dominik, Beck, Heinz, Till, Andreas, Wüllner, Ullrich, Ziller, Michael J., Wagner, Wolfgang, Peitz, Michael, Brüstle, Oliver
הוצא לאור ב Nat Commun (2018)

Targeted disruption of DNMT1, DNMT3A and DNMT3B in human embryonic stem cells

מאת Liao, Jing, Karnik, Rahul, Gu, Hongcang, Ziller, Michael J., Clement, Kendell, Tsankov, Alexander M., Akopian, Veronika, Gifford, Casey A., Donaghey, Julie, Galonska, Christina, Pop, Ramona, Reyon, Deepak, Tsai, Shengdar Q., Mallard, William, Joung, J. Keith, Rinn, John L., Gnirke, Andreas, Meissner, Alexander
הוצא לאור ב Nat Genet (2015)