Ground state conditions induce rapid reorganization of core pluripotency factor binding before global epigenetic reprogramming

por Galonska, Christina, Ziller, Michael J., Karnik, Rahul, Meissner, Alexander
Publicado en Cell Stem Cell (2015)

Coverage recommendations for methylation analysis by whole genome bisulfite sequencing

por Ziller, Michael J., Hansen, Kasper D., Meissner, Alexander, Aryee, Martin J.
Publicado en Nat Methods (2014)

Targeted bisulfite sequencing of the dynamic DNA methylome

por Ziller, Michael J., Stamenova, Elena K., Gu, Hongcang, Gnirke, Andreas, Meissner, Alexander
Publicado en Epigenetics Chromatin (2016)

Transcription factor binding dynamics during human ESC differentiation

por Tsankov, Alexander M., Gu, Hongcang, Akopian, Veronika, Ziller, Michael J., Donaghey, Julie, Amit, Ido, Gnirke, Andreas, Meissner, Alexander
Publicado en Nature (2015)

Single-Cell RNA-Sequencing-Based CRISPRi Screening Resolves Molecular Drivers of Early Human Endoderm Development

por Genga, Ryan M.J., Kernfeld, Eric M., Parsi, Krishna M., Parsons, Teagan J., Ziller, Michael J., Maehr, René
Publicado en Cell Rep (2019)

Modeling metabolic networks in C. glutamicum: a comparison of rate laws in combination with various parameter optimization strategies

por Dräger, Andreas, Kronfeld, Marcel, Ziller, Michael J, Supper, Jochen, Planatscher, Hannes, Magnus, Jørgen B, Oldiges, Marco, Kohlbacher, Oliver, Zell, Andreas
Publicado 2009

The systems biology simulation core algorithm

por Keller, Roland, Dörr, Alexander, Tabira, Akito, Funahashi, Akira, Ziller, Michael J, Adams, Richard, Rodriguez, Nicolas, Novère, Nicolas Le, Hiroi, Noriko, Planatscher, Hannes, Zell, Andreas, Dräger, Andreas
Publicado 2013

Genomic Distribution and Inter-Sample Variation of Non-CpG Methylation across Human Cell Types

por Ziller, Michael J., Müller, Fabian, Liao, Jing, Zhang, Yingying, Gu, Hongcang, Bock, Christoph, Boyle, Patrick, Epstein, Charles B., Bernstein, Bradley E., Lengauer, Thomas, Gnirke, Andreas, Meissner, Alexander
Publicado 2011

Analysing human neural stem cell ontogeny by consecutive isolation of Notch active neural progenitors

por Edri, Reuven, Yaffe, Yakey, Ziller, Michael J., Mutukula, Naresh, Volkman, Rotem, David, Eyal, Jacob-Hirsch, Jasmine, Malcov, Hagar, Levy, Carmit, Rechavi, Gideon, Gat-Viks, Irit, Meissner, Alexander, Elkabetz, Yechiel
Publicado en Nat Commun (2015)

Charting a dynamic DNA methylation landscape of the human genome

por Ziller, Michael J., Gu, Hongcang, Müller, Fabian, Donaghey, Julie, Tsai, Linus T.-Y., Kohlbacher, Oliver, De Jager, Phil L., Rosen, Evan D., Bennett, David A., Bernstein, Bradley E., Gnirke, Andreas, Meissner, Alexander
Publicado 2013

Information recovery from low coverage whole-genome bisulfite sequencing

por Libertini, Emanuele, Heath, Simon C., Hamoudi, Rifat A., Gut, Marta, Ziller, Michael J., Czyz, Agata, Ruotti, Victor, Stunnenberg, Hendrik G., Frontini, Mattia, Ouwehand, Willem H., Meissner, Alexander, Gut, Ivo G., Beck, Stephan
Publicado en Nat Commun (2016)

Genetic and epigenetic variation, but not diet, shape the sperm methylome

por Shea, Jeremy M., Serra, Ryan W., Carone, Benjamin R., Shulha, Hennady P., Kucukural, Alper, Ziller, Michael J., Vallaster, Markus P., Gu, Hongcang, Tapper, Andrew R., Gardner, Paul D., Meissner, Alexander, Garber, Manuel, Rando, Oliver J.
Publicado en Dev Cell (2015)

Global delay in nascent strand DNA methylation

por Charlton, Jocelyn, Downing, Timothy L., Smith, Zachary D., Gu, Hongcang, Clement, Kendell, Pop, Ramona, Akopian, Veronika, Klages, Sven, Santos, David P., Tsankov, Alexander M., Timmermann, Bernd, Ziller, Michael J., Kiskinis, Evangelos, Gnirke, Andreas, Meissner, Alexander
Publicado en Nat Struct Mol Biol (2018)

Epigenomics and chromatin dynamics

por Akopian, Veronika, Chan, Michelle M, Clement, Kendell, Galonska, Christina, Gifford, Casey A, Lehtola, Elizabeth, Liao, Jing, Samavarchi-Tehrani, Payman, Sindhu, Camille, Smith, Zachary D, Tsankov, Alexander M, Webster, Jamie, Zhang, Yingying, Ziller, Michael J, Meissner, Alexander
Publicado 2012

Epigenetic Memory Underlies Cell-Autonomous Heterogeneous Behavior of Hematopoietic Stem Cells

por Yu, Vionnie W.C., Yusuf, Rushdia Z., Oki, Toshihiko, Wu, Juwell, Saez, Borja, Wang, Xin, Cook, Colleen, Baryawno, Ninib, Ziller, Michael J., Lee, Eunjung, Gu, Hongcang, Meissner, Alexander, Lin, Charles P., Kharchenko, Peter V., Scadden, David T.
Publicado en Cell (2017)

Genome-wide tracking of dCas9-methyltransferase footprints

por Galonska, Christina, Charlton, Jocelyn, Mattei, Alexandra L., Donaghey, Julie, Clement, Kendell, Gu, Hongcang, Mohammad, Arman W., Stamenova, Elena K., Cacchiarelli, Davide, Klages, Sven, Timmermann, Bernd, Cantz, Tobias, Schöler, Hans R., Gnirke, Andreas, Ziller, Michael J., Meissner, Alexander
Publicado en Nat Commun (2018)

Genetic determinants and epigenetic effects of pioneer factor occupancy

por Donaghey, Julie, Thakurela, Sudhir, Charlton, Jocelyn, Chen, Jennifer, Smith, Zachary D., Gu, Hongcang, Pop, Ramona, Clement, Kendell, Stamenova, Elena, Karnik, Rahul, Kelley, David R., Gifford, Casey A., Cacchiarelli, Davide, Rinn, John L., Gnirke, Andreas, Ziller, Michael J., Meissner, Alexander
Publicado en Nat Genet (2018)

Dissecting the Functional Consequences of de Novo DNA Methylation Dynamics in Human Motor Neuron Differentiation and Physiology

por Ziller, Michael J., Ortega, Juan A., Quinlan, Katharina A., Santos, David P., Gu, Hongcang, Martin, Eric J., Galonska, Christina, Pop, Ramona, Maidl, Susanne, Di Pardo, Alba, Huang, Mei, Meltzer, Herbert Y., Gnirke, Andreas, Heckman, CJ, Meissner, Alexander, Kiskinis, Evangelos
Publicado en Cell Stem Cell (2018)

A stably self-renewing adult blood-derived induced neural stem cell exhibiting patternability and epigenetic rejuvenation

por Sheng, Chao, Jungverdorben, Johannes, Wiethoff, Hendrik, Lin, Qiong, Flitsch, Lea J., Eckert, Daniela, Hebisch, Matthias, Fischer, Julia, Kesavan, Jaideep, Weykopf, Beatrice, Schneider, Linda, Holtkamp, Dominik, Beck, Heinz, Till, Andreas, Wüllner, Ullrich, Ziller, Michael J., Wagner, Wolfgang, Peitz, Michael, Brüstle, Oliver
Publicado en Nat Commun (2018)

Targeted disruption of DNMT1, DNMT3A and DNMT3B in human embryonic stem cells

por Liao, Jing, Karnik, Rahul, Gu, Hongcang, Ziller, Michael J., Clement, Kendell, Tsankov, Alexander M., Akopian, Veronika, Gifford, Casey A., Donaghey, Julie, Galonska, Christina, Pop, Ramona, Reyon, Deepak, Tsai, Shengdar Q., Mallard, William, Joung, J. Keith, Rinn, John L., Gnirke, Andreas, Meissner, Alexander
Publicado en Nat Genet (2015)