How do alignment programs perform on sequencing data with varying qualities and from repetitive regions?

av Yu, Xiaoqing, Guda, Kishore, Willis, Joseph, Veigl, Martina, Wang, Zhenghe, Markowitz, Sanford, Adams, Mark D, Sun, Shuying
Publicerad 2012

Relationships between expression of BCS1L, mitochondrial bioenergetics, and fatigue among patients with prostate cancer

av Hsiao, Chao-Pin, Chen, Mei-Kuang, Veigl, Martina L, Ellis, Rodney, Cooney, Matthew, Daly, Barbara, Hoppel, Charles
I publikationen Cancer Manag Res (2019)

A Cross-sectional Study of KLKB1 and PRCP Polymorphisms in Patient Samples with Cardiovascular Disease

av Gittleman, Haley R., Merkulova, Alona, Alhalabi, Omar, Stavrou, Evi X., Veigl, Martina L., Barnholtz-Sloan, Jill S., Schmaier, Alvin H.
I publikationen Front Med (Lausanne) (2016)

Genetic Variation in 15-Hydroxyprostaglandin Dehydrogenase and Colon Cancer Susceptibility

av Thompson, Cheryl L., Fink, Stephen P., Lutterbaugh, James D., Elston, Robert C., Veigl, Martina L., Markowitz, Sanford D., Li, Li
Publicerad 2013

DNA mismatch repair (MMR)-dependent 5-fluorouracil cytotoxicity and the potential for new therapeutic targets

av Li, Long Shan, Morales, Julio C, Veigl, Martina, Sedwick, David, Greer, Sheldon, Meyers, Mark, Wagner, Mark, Fishel, Richard, Boothman, David A
Publicerad 2009

Global Mutational Profiling of Formalin Fixed Human Colon Cancers from a Pathology Archive

av Adams, Mark D., Veigl, Martina L., Wang, Zhenghe, Molyneux, Neil, Sun, Shuying, Guda, Kishore, Yu, Xiaoqing, Markowitz, Sanford D., Willis, Joseph
Publicerad 2012

Discovery of common sequences absent in the human reference genome using pooled samples from next generation sequencing

av Liu, Yu, Koyutürk, Mehmet, Maxwell, Sean, Xiang, Min, Veigl, Martina, Cooper, Richard S, Tayo, Bamidele O, Li, Li, LaFramboise, Thomas, Wang, Zhenghe, Zhu, Xiaofeng, Chance, Mark R
Publicerad 2014

Biallelic inactivation of hMLH1 by epigenetic gene silencing, a novel mechanism causing human MSI cancers

av Veigl, Martina L., Kasturi, Lakshmi, Olechnowicz, Joseph, Ma, AiHong, Lutterbaugh, James D., Periyasamy, Sumudra, Li, Guo-Min, Drummond, James, Modrich, Paul L., Sedwick, W. David, Markowitz, Sanford D.
Publicerad 1998

H3K4me3 inversely correlates with DNA methylation at a large class of non-CpG-island-containing start sites

av Balasubramanian, Dheepa, Akhtar-Zaidi, Batool, Song, Lingyun, Bartels, Cynthia F, Veigl, Martina, Beard, Lydia, Myeroff, Lois, Guda, Kishore, Lutterbaugh, James, Willis, Joseph, Crawford, Gregory E, Markowitz, Sanford D, Scacheri, Peter C
Publicerad 2012

Transcriptomic-metabolomic reprogramming in EGFR-mutant NSCLC early adaptive drug escape linking TGFβ2-bioenergetics-mitochondrial priming

av Thiagarajan, Praveena S., Wu, Xiaoliang, Zhang, Wei, Shi, Ivy, Bagai, Rakesh, Leahy, Patrick, Feng, Yan, Veigl, Martina, Lindner, Daniel, Danielpour, David, Yin, Lihong, Rosell, Rafael, Bivona, Trever G., Zhang, Zhenfeng, Ma, Patrick C.
I publikationen Oncotarget (2016)

Induction of KIAA1199/CEMIP is associated with colon cancer phenotype and poor patient survival

av Fink, Stephen P., Myeroff, Lois L., Kariv, Revital, Platzer, Petra, Xin, Baozhong, Mikkola, Debra, Lawrence, Earl, Morris, Nathan, Nosrati, Arman, Willson, James K. V., Willis, Joseph, Veigl, Martina, Barnholtz-Sloan, Jill S., Wang, Zhenghe, Markowitz, Sanford D.
I publikationen Oncotarget (2015)

Novel recurrently mutated genes in African American colon cancers

av Guda, Kishore, Veigl, Martina L., Varadan, Vinay, Nosrati, Arman, Ravi, Lakshmeswari, Lutterbaugh, James, Beard, Lydia, Willson, James K. V., Sedwick, W. David, Wang, Zhenghe John, Molyneaux, Neil, Miron, Alexander, Adams, Mark D., Elston, Robert C., Markowitz, Sanford D., Willis, Joseph E.
I publikationen Proc Natl Acad Sci U S A (2015)

Reply to Ashktorab et al.: Mutational landscape of colon cancers in African Americans

av Guda, Kishore, Veigl, Martina L., Varadan, Vinay, Nosrati, Arman, Ravi, Lakshmeswari, Lutterbaugh, James, Beard, Lydia, Willson, James K. V., Sedwick, W. David, Wang, Zhenghe John, Molyneaux, Neil, Miron, Alexander, Adams, Mark D., Elston, Robert C., Markowitz, Sanford D., Willis, Joseph E.
I publikationen Proc Natl Acad Sci U S A (2015)

Gene Expression Changes Accompanying the Duodenal Adenoma-Carcinoma Sequence in Familial Adenomatous Polyposis

av Thiruvengadam, Sushrut S., O'Malley, Margaret, LaGuardia, Lisa, Lopez, Rocio, Wang, Zhen, Shadrach, Bonnie L., Chen, Yanwen, Li, Chunbiao, Veigl, Martina L., Barnholtz-Sloan, Jill S., Pai, Rish K., Church, James M., Kalady, Matthew F., Walsh, R. Matthew, Burke, Carol A.
I publikationen Clin Transl Gastroenterol (2019)

Vascular dimorphism ensured by regulated proteoglycan dynamics favors rapid umbilical artery closure at birth

av Nandadasa, Sumeda, Szafron, Jason M, Pathak, Vai, Murtada, Sae-Il, Kraft, Caroline M, O'Donnell, Anna, Norvik, Christian, Hughes, Clare, Caterson, Bruce, Domowicz, Miriam S, Schwartz, Nancy B, Tran-Lundmark, Karin, Veigl, Martina, Sedwick, David, Philipson, Elliot H, Humphrey, Jay D, Apte, Suneel S
I publikationen eLife (2020)

A nonrandomized trial of vitamin D supplementation for Barrett’s esophagus

av Cummings, Linda C., Thota, Prashanthi N., Willis, Joseph E., Chen, Yanwen, Cooper, Gregory S., Furey, Nancy, Bednarchik, Beth, Alashkar, Bronia M., Dumot, John, Faulx, Ashley L., Fink, Stephen P., Kresak, Adam M., Abusneineh, Basel, Barnholtz-Sloan, Jill, Leahy, Patrick, Veigl, Martina L., Chak, Amitabh, Markowitz, Sanford D.
I publikationen PLoS One (2017)

5-fluorouracil enhances the anti-tumor activity of the glutaminase inhibitor CB-839 against PIK3CA-mutant colorectal cancers

av Zhao, Yiqing, Feng, Xiujing, Chen, Yicheng, Selfridge, J. Eva, Gorityala, Shashank, Du, Zhanwen, Wang, Janet M., Hao, Yujun, Cioffi, Gino, Conlon, Ronald A., Barnholtz-Sloan, Jill S., Saltzman, Joel, Krishnamurthi, Smitha S., Vinayak, Shaveta, Veigl, Martina, Xu, Yan, Bajor, David L., Markowitz, Sanford D., Meropol, Neal J., Eads, Jennifer R., Wang, Zhenghe
I publikationen Cancer Res (2020)

A Germline Variant on Chromosome 4q31.1 Associates with Susceptibility to Developing Colon Cancer Metastasis

av Markowitz, Sanford D., Nock, Nora L., Schmit, Stephanie L., Stadler, Zsofia K., Joseph, Vijai, Zhang, Lu, Willis, Joseph E., Scacheri, Peter, Veigl, Martina, Adams, Mark D., Raskin, Leon, Sullivan, John F., Stratton, Kelly, Shia, Jinru, Ellis, Nathan, Rennert, Hedy S., Manschreck, Christopher, Li, Li, Offit, Kenneth, Elston, Robert C., Rennert, Gadi, Gruber, Stephen B.
I publikationen PLoS One (2016)

Genomic regions associated with susceptibility to Barrett’s esophagus and esophageal adenocarcinoma in African Americans: The cross BETRNet admixture study

av Sun, Xiangqing, Chandar, Apoorva K., Canto, Marcia I., Thota, Prashanthi N., Brock, Malcom, Shaheen, Nicholas J., Beer, David G., Wang, Jean S., Falk, Gary W., Iyer, Prasad G., Abrams, Julian A., Venkat-Ramani, Medha, Veigl, Martina, Miron, Alexander, Willis, Joseph, Patil, Deepa T., Nalbantoglu, Ilke, Guda, Kishore, Markowitz, Sanford D., Zhu, Xiaofeng, Elston, Robert, Chak, Amitabh
I publikationen PLoS One (2017)