How do alignment programs perform on sequencing data with varying qualities and from repetitive regions?

Por Yu, Xiaoqing, Guda, Kishore, Willis, Joseph, Veigl, Martina, Wang, Zhenghe, Markowitz, Sanford, Adams, Mark D, Sun, Shuying
Publicado em 2012

Relationships between expression of BCS1L, mitochondrial bioenergetics, and fatigue among patients with prostate cancer

Por Hsiao, Chao-Pin, Chen, Mei-Kuang, Veigl, Martina L, Ellis, Rodney, Cooney, Matthew, Daly, Barbara, Hoppel, Charles
Publicado no Cancer Manag Res (2019)

A Cross-sectional Study of KLKB1 and PRCP Polymorphisms in Patient Samples with Cardiovascular Disease

Por Gittleman, Haley R., Merkulova, Alona, Alhalabi, Omar, Stavrou, Evi X., Veigl, Martina L., Barnholtz-Sloan, Jill S., Schmaier, Alvin H.
Publicado no Front Med (Lausanne) (2016)

Genetic Variation in 15-Hydroxyprostaglandin Dehydrogenase and Colon Cancer Susceptibility

Por Thompson, Cheryl L., Fink, Stephen P., Lutterbaugh, James D., Elston, Robert C., Veigl, Martina L., Markowitz, Sanford D., Li, Li
Publicado em 2013

DNA mismatch repair (MMR)-dependent 5-fluorouracil cytotoxicity and the potential for new therapeutic targets

Por Li, Long Shan, Morales, Julio C, Veigl, Martina, Sedwick, David, Greer, Sheldon, Meyers, Mark, Wagner, Mark, Fishel, Richard, Boothman, David A
Publicado em 2009

Global Mutational Profiling of Formalin Fixed Human Colon Cancers from a Pathology Archive

Por Adams, Mark D., Veigl, Martina L., Wang, Zhenghe, Molyneux, Neil, Sun, Shuying, Guda, Kishore, Yu, Xiaoqing, Markowitz, Sanford D., Willis, Joseph
Publicado em 2012

Discovery of common sequences absent in the human reference genome using pooled samples from next generation sequencing

Por Liu, Yu, Koyutürk, Mehmet, Maxwell, Sean, Xiang, Min, Veigl, Martina, Cooper, Richard S, Tayo, Bamidele O, Li, Li, LaFramboise, Thomas, Wang, Zhenghe, Zhu, Xiaofeng, Chance, Mark R
Publicado em 2014

Biallelic inactivation of hMLH1 by epigenetic gene silencing, a novel mechanism causing human MSI cancers

Por Veigl, Martina L., Kasturi, Lakshmi, Olechnowicz, Joseph, Ma, AiHong, Lutterbaugh, James D., Periyasamy, Sumudra, Li, Guo-Min, Drummond, James, Modrich, Paul L., Sedwick, W. David, Markowitz, Sanford D.
Publicado em 1998

H3K4me3 inversely correlates with DNA methylation at a large class of non-CpG-island-containing start sites

Por Balasubramanian, Dheepa, Akhtar-Zaidi, Batool, Song, Lingyun, Bartels, Cynthia F, Veigl, Martina, Beard, Lydia, Myeroff, Lois, Guda, Kishore, Lutterbaugh, James, Willis, Joseph, Crawford, Gregory E, Markowitz, Sanford D, Scacheri, Peter C
Publicado em 2012

Transcriptomic-metabolomic reprogramming in EGFR-mutant NSCLC early adaptive drug escape linking TGFβ2-bioenergetics-mitochondrial priming

Por Thiagarajan, Praveena S., Wu, Xiaoliang, Zhang, Wei, Shi, Ivy, Bagai, Rakesh, Leahy, Patrick, Feng, Yan, Veigl, Martina, Lindner, Daniel, Danielpour, David, Yin, Lihong, Rosell, Rafael, Bivona, Trever G., Zhang, Zhenfeng, Ma, Patrick C.
Publicado no Oncotarget (2016)

Induction of KIAA1199/CEMIP is associated with colon cancer phenotype and poor patient survival

Por Fink, Stephen P., Myeroff, Lois L., Kariv, Revital, Platzer, Petra, Xin, Baozhong, Mikkola, Debra, Lawrence, Earl, Morris, Nathan, Nosrati, Arman, Willson, James K. V., Willis, Joseph, Veigl, Martina, Barnholtz-Sloan, Jill S., Wang, Zhenghe, Markowitz, Sanford D.
Publicado no Oncotarget (2015)

Novel recurrently mutated genes in African American colon cancers

Por Guda, Kishore, Veigl, Martina L., Varadan, Vinay, Nosrati, Arman, Ravi, Lakshmeswari, Lutterbaugh, James, Beard, Lydia, Willson, James K. V., Sedwick, W. David, Wang, Zhenghe John, Molyneaux, Neil, Miron, Alexander, Adams, Mark D., Elston, Robert C., Markowitz, Sanford D., Willis, Joseph E.
Publicado no Proc Natl Acad Sci U S A (2015)

Reply to Ashktorab et al.: Mutational landscape of colon cancers in African Americans

Por Guda, Kishore, Veigl, Martina L., Varadan, Vinay, Nosrati, Arman, Ravi, Lakshmeswari, Lutterbaugh, James, Beard, Lydia, Willson, James K. V., Sedwick, W. David, Wang, Zhenghe John, Molyneaux, Neil, Miron, Alexander, Adams, Mark D., Elston, Robert C., Markowitz, Sanford D., Willis, Joseph E.
Publicado no Proc Natl Acad Sci U S A (2015)

Gene Expression Changes Accompanying the Duodenal Adenoma-Carcinoma Sequence in Familial Adenomatous Polyposis

Por Thiruvengadam, Sushrut S., O'Malley, Margaret, LaGuardia, Lisa, Lopez, Rocio, Wang, Zhen, Shadrach, Bonnie L., Chen, Yanwen, Li, Chunbiao, Veigl, Martina L., Barnholtz-Sloan, Jill S., Pai, Rish K., Church, James M., Kalady, Matthew F., Walsh, R. Matthew, Burke, Carol A.
Publicado no Clin Transl Gastroenterol (2019)

Vascular dimorphism ensured by regulated proteoglycan dynamics favors rapid umbilical artery closure at birth

Por Nandadasa, Sumeda, Szafron, Jason M, Pathak, Vai, Murtada, Sae-Il, Kraft, Caroline M, O'Donnell, Anna, Norvik, Christian, Hughes, Clare, Caterson, Bruce, Domowicz, Miriam S, Schwartz, Nancy B, Tran-Lundmark, Karin, Veigl, Martina, Sedwick, David, Philipson, Elliot H, Humphrey, Jay D, Apte, Suneel S
Publicado no eLife (2020)

A nonrandomized trial of vitamin D supplementation for Barrett’s esophagus

Por Cummings, Linda C., Thota, Prashanthi N., Willis, Joseph E., Chen, Yanwen, Cooper, Gregory S., Furey, Nancy, Bednarchik, Beth, Alashkar, Bronia M., Dumot, John, Faulx, Ashley L., Fink, Stephen P., Kresak, Adam M., Abusneineh, Basel, Barnholtz-Sloan, Jill, Leahy, Patrick, Veigl, Martina L., Chak, Amitabh, Markowitz, Sanford D.
Publicado no PLoS One (2017)

5-fluorouracil enhances the anti-tumor activity of the glutaminase inhibitor CB-839 against PIK3CA-mutant colorectal cancers

Por Zhao, Yiqing, Feng, Xiujing, Chen, Yicheng, Selfridge, J. Eva, Gorityala, Shashank, Du, Zhanwen, Wang, Janet M., Hao, Yujun, Cioffi, Gino, Conlon, Ronald A., Barnholtz-Sloan, Jill S., Saltzman, Joel, Krishnamurthi, Smitha S., Vinayak, Shaveta, Veigl, Martina, Xu, Yan, Bajor, David L., Markowitz, Sanford D., Meropol, Neal J., Eads, Jennifer R., Wang, Zhenghe
Publicado no Cancer Res (2020)

A Germline Variant on Chromosome 4q31.1 Associates with Susceptibility to Developing Colon Cancer Metastasis

Por Markowitz, Sanford D., Nock, Nora L., Schmit, Stephanie L., Stadler, Zsofia K., Joseph, Vijai, Zhang, Lu, Willis, Joseph E., Scacheri, Peter, Veigl, Martina, Adams, Mark D., Raskin, Leon, Sullivan, John F., Stratton, Kelly, Shia, Jinru, Ellis, Nathan, Rennert, Hedy S., Manschreck, Christopher, Li, Li, Offit, Kenneth, Elston, Robert C., Rennert, Gadi, Gruber, Stephen B.
Publicado no PLoS One (2016)

Genomic regions associated with susceptibility to Barrett’s esophagus and esophageal adenocarcinoma in African Americans: The cross BETRNet admixture study

Por Sun, Xiangqing, Chandar, Apoorva K., Canto, Marcia I., Thota, Prashanthi N., Brock, Malcom, Shaheen, Nicholas J., Beer, David G., Wang, Jean S., Falk, Gary W., Iyer, Prasad G., Abrams, Julian A., Venkat-Ramani, Medha, Veigl, Martina, Miron, Alexander, Willis, Joseph, Patil, Deepa T., Nalbantoglu, Ilke, Guda, Kishore, Markowitz, Sanford D., Zhu, Xiaofeng, Elston, Robert, Chak, Amitabh
Publicado no PLoS One (2017)