Prevalence and Source of Fecal and Oral Bacteria on Infant, Child, and Adult Hands

by Shaffer, Michael, Lozupone, Catherine
Published in mSystems (2018)

Microprocessor Monitoring of the EEG of Anesthetized Patients

by Shaffer, Michael J., McCullough, Charles E.
Published 1980

Where does Neisseria acquire foreign DNA from: an examination of the source of genomic and pathogenic islands and the evolution of the Neisseria genus

by Putonti, Catherine, Nowicki, Bogdan, Shaffer, Michael, Fofanov, Yuriy, Nowicki, Stella
Published 2013

Modified Outpatient Physical Therapy Improvement in Movement Assessment Log (mOPTIMAL): A Responsive and Reliable Tool for Patients with Non-Operative Shoulder Pain

by Shaffer, Michael A., Kestel, Lisabeth L., Wolf, Brian R., Shields, Richard K.
Published in Iowa Orthop J (2020)

Microbiome and Metabolome Data Integration Provides Insight Into Health and Disease

by Shaffer, Michael, Armstrong, Abigail JS, Phelan, Vanessa V, Reisdorph, Nichole, Lozupone, Catherine A
Published in Transl Res (2017)

Optical dosimetry probes to validate Monte Carlo and empirical-method-based NIR dose planning in the brain

by Verleker, Akshay Prabhu, Shaffer, Michael, Fang, Qianqian, Choi, Mi-Ran, Clare, Susan, Stantz, Keith M.
Published in Appl Opt (2016)

Optical dosimetry probes to validate Monte Carlo and empirical-method-based NIR dose planning in the brain: publisher’s note

by Verleker, Akshay Prabhu, Shaffer, Michael, Fang, Qianqian, Choi, Mi-Ran, Clare, Susan, Stantz, Keith M.
Published in Appl Opt (2017)

A natural supplement formula reduces anti-oxidative stress and enhances osteo-chondrogenic differentiation potential in mesenchymal stem cells

by Kim, Dong Hyun, Kim, Dong Hwan, Heck, Bruce E., Shaffer, Michael, Hur, Jin, Yoo, Keon Hee
Published in J Clin Biochem Nutr (2020)

PPAR-δ agonist affects adipo-chondrogenic differentiation of human mesenchymal stem cells through the expression of PPAR-γ

by Kim, Dong Hyun, Kim, Dong Hwan, Heck, Bruce E., Shaffer, Michael, Yoo, Keon Hee, Hur, Jin
Published in Regen Ther (2020)

Complexities of gut microbiome dysbiosis in the context of HIV infection and antiretroviral therapy

by Li, Sam X., Armstrong, Abigail J. S., Neff, C. Preston, Shaffer, Michael, Lozupone, Catherine A., Palmer, Brent E.
Published in Clin Pharmacol Ther (2016)

SPEED, RESISTANCE, AND UNEXPECTED ACCELERATIONS MODULATE FEED FORWARD AND FEEDBACK CONTROL DURING A NOVEL WEIGHT BEARING TASK

by Tseng, Shih-Chiao, Cole, Keith R., Shaffer, Michael A., Petrie, Michael A., Yen, Chu-Ling, Shields, Richard K.
Published in Gait Posture (2016)

An exploration of Prevotella-rich microbiomes in HIV and men who have sex with men

by Armstrong, Abigail J. S., Shaffer, Michael, Nusbacher, Nichole M., Griesmer, Christine, Fiorillo, Suzanne, Schneider, Jennifer M., Preston Neff, C., Li, Sam X., Fontenot, Andrew P., Campbell, Thomas, Palmer, Brent E., Lozupone, Catherine A.
Published in Microbiome (2018)

Correction to: An exploration of Prevotella-rich microbiomes in HIV and men who have sex with men

by Armstrong, Abigail J. S., Shaffer, Michael, Nusbacher, Nichole M., Griesmer, Christine, Fiorillo, Suzanne, Schneider, Jennifer M., Neff, C. Preston, Li, Sam X., Fontenot, Andrew P., Campbell, Thomas, Palmer, Brent E., Lozupone, Catherine A.
Published in Microbiome (2020)

Diverse intestinal bacteria contain putative zwitterionic capsular polysaccharides with anti-inflammatory properties

by Neff, C. Preston, Rhodes, Matthew E., Arnolds, Kathleen L., Collins, Colm B., Donnelly, Jody, Nusbacher, Nichole, Jedlicka, Paul, Schneider, Jennifer M., McCarter, Martin D., Shaffer, Michael, Mazmanian, Sarkis K., Palmer, Brent E., Lozupone, Catherine A.
Published in Cell Host Microbe (2016)

Gut microbiota from high-risk men who have sex with men drive immune activation in gnotobiotic mice and in vitro HIV infection

by Li, Sam X., Sen, Sharon, Schneider, Jennifer M., Xiong, Ka-Na, Nusbacher, Nichole M., Moreno-Huizar, Nancy, Shaffer, Michael, Armstrong, Abigail J. S., Severs, Erin, Kuhn, Kristine, Neff, Charles P., McCarter, Martin, Campbell, Thomas, Lozupone, Catherine A., Palmer, Brent E.
Published in PLoS Pathog (2019)

DRAM for distilling microbial metabolism to automate the curation of microbiome function

by Shaffer, Michael, Borton, Mikayla A, McGivern, Bridget B, Zayed, Ahmed A, La Rosa, Sabina Leanti, Solden, Lindsey M, Liu, Pengfei, Narrowe, Adrienne B, Rodríguez-Ramos, Josué, Bolduc, Benjamin, Gazitúa, M Consuelo, Daly, Rebecca A, Smith, Garrett J, Vik, Dean R, Pope, Phil B, Sullivan, Matthew B, Roux, Simon, Wrighton, Kelly C
Published in Nucleic Acids Res (2020)

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

by Bolyen, Evan, Rideout, Jai Ram, Dillon, Matthew R., Bokulich, Nicholas A., Abnet, Christian C., Al-Ghalith, Gabriel A., Alexander, Harriet, Alm, Eric J., Arumugam, Manimozhiyan, Asnicar, Francesco, Bai, Yang, Bisanz, Jordan E., Bittinger, Kyle, Brejnrod, Asker, Brislawn, Colin J., Brown, C. Titus, Callahan, Benjamin J., Caraballo-Rodríguez, Andrés Mauricio, Chase, John, Cope, Emily K., Da Silva, Ricardo, Diener, Christian, Dorrestein, Pieter C., Douglas, Gavin M., Durall, Daniel M., Duvallet, Claire, Edwardson, Christian F., Ernst, Madeleine, Estaki, Mehrbod, Fouquier, Jennifer, Gauglitz, Julia M., Gibbons, Sean M., Gibson, Deanna L., Gonzalez, Antonio, Gorlick, Kestrel, Guo, Jiarong, Hillmann, Benjamin, Holmes, Susan, Holste, Hannes, Huttenhower, Curtis, Huttley, Gavin A., Janssen, Stefan, Jarmusch, Alan K., Jiang, Lingjing, Kaehler, Benjamin D., Kang, Kyo Bin, Keefe, Christopher R., Keim, Paul, Kelley, Scott T., Knights, Dan, Koester, Irina, Kosciolek, Tomasz, Kreps, Jorden, Langille, Morgan G. I., Lee, Joslynn, Ley, Ruth, Liu, Yong-Xin, Loftfield, Erikka, Lozupone, Catherine, Maher, Massoud, Marotz, Clarisse, Martin, Bryan D., McDonald, Daniel, McIver, Lauren J., Melnik, Alexey V., Metcalf, Jessica L., Morgan, Sydney C., Morton, Jamie T., Naimey, Ahmad Turan, Navas-Molina, Jose A., Nothias, Louis Felix, Orchanian, Stephanie B., Pearson, Talima, Peoples, Samuel L., Petras, Daniel, Preuss, Mary Lai, Pruesse, Elmar, Rasmussen, Lasse Buur, Rivers, Adam, Robeson, Michael S., Rosenthal, Patrick, Segata, Nicola, Shaffer, Michael, Shiffer, Arron, Sinha, Rashmi, Song, Se Jin, Spear, John R., Swafford, Austin D., Thompson, Luke R., Torres, Pedro J., Trinh, Pauline, Tripathi, Anupriya, Turnbaugh, Peter J., Ul-Hasan, Sabah, vander Hooft, Justin J. J., Vargas, Fernando, Vázquez-Baeza, Yoshiki, Vogtmann, Emily, von Hippel, Max, Walters, William, Wan, Yunhu, Wang, Mingxun, Warren, Jonathan, Weber, Kyle C., Williamson, Charles H. D., Willis, Amy D., Xu, Zhenjiang Zech, Zaneveld, Jesse R., Zhang, Yilong, Zhu, Qiyun, Knight, Rob, Caporaso, J. Gregory
Published in Nat Biotechnol (2019)