Frequent Toggling between Alternative Amino Acids Is Driven by Selection in HIV-1

od Delport, Wayne, Scheffler, Konrad, Seoighe, Cathal
Izdano 2008

Models of coding sequence evolution

od Delport, Wayne, Scheffler, Konrad, Seoighe, Cathal
Izdano 2009

Epitope Discovery with Phylogenetic Hidden Markov Models

od Lacerda, Miguel, Scheffler, Konrad, Seoighe, Cathal
Izdano 2010

Evidence of HIV-1 adaptation to host HLA alleles following chimp-to-human transmission

od Ngandu, Nobubelo K, Seoighe, Cathal, Scheffler, Konrad
Izdano 2009

On the Validity of Evolutionary Models with Site-Specific Parameters

od Scheffler, Konrad, Murrell, Ben, Kosakovsky Pond, Sergei L.
Izdano 2014

Correcting the Bias of Empirical Frequency Parameter Estimators in Codon Models

od Kosakovsky Pond, Sergei, Delport, Wayne, Muse, Spencer V., Scheffler, Konrad
Izdano 2010

Timing the SARS-CoV-2 Index Case in Hubei Province

od Pekar, Jonathan, Worobey, Michael, Moshiri, Niema, Scheffler, Konrad, Wertheim, Joel O.
Izdano u bioRxiv (2020)

Timing the SARS-CoV-2 index case in Hubei province

od Pekar, Jonathan, Worobey, Michael, Moshiri, Niema, Scheffler, Konrad, Wertheim, Joel O.
Izdano u Science (2021)

Genome-wide survey of allele-specific splicing in humans

od Nembaware, Victoria, Lupindo, Bukiwe, Schouest, Katherine, Spillane, Charles, Scheffler, Konrad, Seoighe, Cathal
Izdano 2008

Extensive purifying selection acting on synonymous sites in HIV-1 Group M sequences

od Martin Darren, Woodman Zenda, Moore Penny, Scheffler Konrad, Ngandu Nobubelo K, Seoighe Cathal
Izdano 2008-12-01

Extensive purifying selection acting on synonymous sites in HIV-1 Group M sequences

od Ngandu, Nobubelo K, Scheffler, Konrad, Moore, Penny, Woodman, Zenda, Martin, Darren, Seoighe, Cathal
Izdano 2008

Benchmarking Multi-Rate Codon Models

od Delport, Wayne, Scheffler, Konrad, Gravenor, Mike B., Muse, Spencer V., Kosakovsky Pond, Sergei
Izdano 2010

Modeling HIV-1 Drug Resistance as Episodic Directional Selection

od Murrell, Ben, de Oliveira, Tulio, Seebregts, Chris, Kosakovsky Pond, Sergei L., Scheffler, Konrad
Izdano 2012

RELAX: Detecting Relaxed Selection in a Phylogenetic Framework

od Wertheim, Joel O., Murrell, Ben, Smith, Martin D., Kosakovsky Pond, Sergei L., Scheffler, Konrad
Izdano u Mol Biol Evol (2015)

Detecting Individual Sites Subject to Episodic Diversifying Selection

od Murrell, Ben, Wertheim, Joel O., Moola, Sasha, Weighill, Thomas, Scheffler, Konrad, Kosakovsky Pond, Sergei L.
Izdano 2012

Phylogenetic Relatedness of HIV-1 Donor and Recipient Populations

od Wertheim, Joel O., Scheffler, Konrad, Choi, Jun Yong, Smith, Davey M, Kosakovsky Pond, Sergei L
Izdano 2013

Evolutionary Origins of Human Herpes Simplex Viruses 1 and 2

od Wertheim, Joel O., Smith, Martin D., Smith, Davey M., Scheffler, Konrad, Kosakovsky Pond, Sergei L.
Izdano 2014

CodonTest: Modeling Amino Acid Substitution Preferences in Coding Sequences

od Delport, Wayne, Scheffler, Konrad, Botha, Gordon, Gravenor, Mike B., Muse, Spencer V., Kosakovsky Pond, Sergei L.
Izdano 2010

A Random Effects Branch-Site Model for Detecting Episodic Diversifying Selection

od Kosakovsky Pond, Sergei L., Murrell, Ben, Fourment, Mathieu, Frost, Simon D.W., Delport, Wayne, Scheffler, Konrad
Izdano 2011

FUBAR: A Fast, Unconstrained Bayesian AppRoximation for Inferring Selection

od Murrell, Ben, Moola, Sasha, Mabona, Amandla, Weighill, Thomas, Sheward, Daniel, Kosakovsky Pond, Sergei L., Scheffler, Konrad
Izdano 2013