Frequent Toggling between Alternative Amino Acids Is Driven by Selection in HIV-1

door Delport, Wayne, Scheffler, Konrad, Seoighe, Cathal
Gepubliceerd in 2008

Models of coding sequence evolution

door Delport, Wayne, Scheffler, Konrad, Seoighe, Cathal
Gepubliceerd in 2009

Epitope Discovery with Phylogenetic Hidden Markov Models

door Lacerda, Miguel, Scheffler, Konrad, Seoighe, Cathal
Gepubliceerd in 2010

Evidence of HIV-1 adaptation to host HLA alleles following chimp-to-human transmission

door Ngandu, Nobubelo K, Seoighe, Cathal, Scheffler, Konrad
Gepubliceerd in 2009

On the Validity of Evolutionary Models with Site-Specific Parameters

door Scheffler, Konrad, Murrell, Ben, Kosakovsky Pond, Sergei L.
Gepubliceerd in 2014

Correcting the Bias of Empirical Frequency Parameter Estimators in Codon Models

door Kosakovsky Pond, Sergei, Delport, Wayne, Muse, Spencer V., Scheffler, Konrad
Gepubliceerd in 2010

Timing the SARS-CoV-2 Index Case in Hubei Province

door Pekar, Jonathan, Worobey, Michael, Moshiri, Niema, Scheffler, Konrad, Wertheim, Joel O.
Gepubliceerd in bioRxiv (2020)

Timing the SARS-CoV-2 index case in Hubei province

door Pekar, Jonathan, Worobey, Michael, Moshiri, Niema, Scheffler, Konrad, Wertheim, Joel O.
Gepubliceerd in Science (2021)

Genome-wide survey of allele-specific splicing in humans

door Nembaware, Victoria, Lupindo, Bukiwe, Schouest, Katherine, Spillane, Charles, Scheffler, Konrad, Seoighe, Cathal
Gepubliceerd in 2008

Extensive purifying selection acting on synonymous sites in HIV-1 Group M sequences

door Martin Darren, Woodman Zenda, Moore Penny, Scheffler Konrad, Ngandu Nobubelo K, Seoighe Cathal
Gepubliceerd in 2008-12-01

Extensive purifying selection acting on synonymous sites in HIV-1 Group M sequences

door Ngandu, Nobubelo K, Scheffler, Konrad, Moore, Penny, Woodman, Zenda, Martin, Darren, Seoighe, Cathal
Gepubliceerd in 2008

Benchmarking Multi-Rate Codon Models

door Delport, Wayne, Scheffler, Konrad, Gravenor, Mike B., Muse, Spencer V., Kosakovsky Pond, Sergei
Gepubliceerd in 2010

Modeling HIV-1 Drug Resistance as Episodic Directional Selection

door Murrell, Ben, de Oliveira, Tulio, Seebregts, Chris, Kosakovsky Pond, Sergei L., Scheffler, Konrad
Gepubliceerd in 2012

RELAX: Detecting Relaxed Selection in a Phylogenetic Framework

door Wertheim, Joel O., Murrell, Ben, Smith, Martin D., Kosakovsky Pond, Sergei L., Scheffler, Konrad
Gepubliceerd in Mol Biol Evol (2015)

Detecting Individual Sites Subject to Episodic Diversifying Selection

door Murrell, Ben, Wertheim, Joel O., Moola, Sasha, Weighill, Thomas, Scheffler, Konrad, Kosakovsky Pond, Sergei L.
Gepubliceerd in 2012

Phylogenetic Relatedness of HIV-1 Donor and Recipient Populations

door Wertheim, Joel O., Scheffler, Konrad, Choi, Jun Yong, Smith, Davey M, Kosakovsky Pond, Sergei L
Gepubliceerd in 2013

Evolutionary Origins of Human Herpes Simplex Viruses 1 and 2

door Wertheim, Joel O., Smith, Martin D., Smith, Davey M., Scheffler, Konrad, Kosakovsky Pond, Sergei L.
Gepubliceerd in 2014

CodonTest: Modeling Amino Acid Substitution Preferences in Coding Sequences

door Delport, Wayne, Scheffler, Konrad, Botha, Gordon, Gravenor, Mike B., Muse, Spencer V., Kosakovsky Pond, Sergei L.
Gepubliceerd in 2010

A Random Effects Branch-Site Model for Detecting Episodic Diversifying Selection

door Kosakovsky Pond, Sergei L., Murrell, Ben, Fourment, Mathieu, Frost, Simon D.W., Delport, Wayne, Scheffler, Konrad
Gepubliceerd in 2011

FUBAR: A Fast, Unconstrained Bayesian AppRoximation for Inferring Selection

door Murrell, Ben, Moola, Sasha, Mabona, Amandla, Weighill, Thomas, Sheward, Daniel, Kosakovsky Pond, Sergei L., Scheffler, Konrad
Gepubliceerd in 2013