Frequent Toggling between Alternative Amino Acids Is Driven by Selection in HIV-1

by Delport, Wayne, Scheffler, Konrad, Seoighe, Cathal
Published 2008

Models of coding sequence evolution

by Delport, Wayne, Scheffler, Konrad, Seoighe, Cathal
Published 2009

Epitope Discovery with Phylogenetic Hidden Markov Models

by Lacerda, Miguel, Scheffler, Konrad, Seoighe, Cathal
Published 2010

Evidence of HIV-1 adaptation to host HLA alleles following chimp-to-human transmission

by Ngandu, Nobubelo K, Seoighe, Cathal, Scheffler, Konrad
Published 2009

On the Validity of Evolutionary Models with Site-Specific Parameters

by Scheffler, Konrad, Murrell, Ben, Kosakovsky Pond, Sergei L.
Published 2014

Correcting the Bias of Empirical Frequency Parameter Estimators in Codon Models

by Kosakovsky Pond, Sergei, Delport, Wayne, Muse, Spencer V., Scheffler, Konrad
Published 2010

Timing the SARS-CoV-2 Index Case in Hubei Province

by Pekar, Jonathan, Worobey, Michael, Moshiri, Niema, Scheffler, Konrad, Wertheim, Joel O.
Published in bioRxiv (2020)

Timing the SARS-CoV-2 index case in Hubei province

by Pekar, Jonathan, Worobey, Michael, Moshiri, Niema, Scheffler, Konrad, Wertheim, Joel O.
Published in Science (2021)

Genome-wide survey of allele-specific splicing in humans

by Nembaware, Victoria, Lupindo, Bukiwe, Schouest, Katherine, Spillane, Charles, Scheffler, Konrad, Seoighe, Cathal
Published 2008

Extensive purifying selection acting on synonymous sites in HIV-1 Group M sequences

by Martin Darren, Woodman Zenda, Moore Penny, Scheffler Konrad, Ngandu Nobubelo K, Seoighe Cathal
Published 2008-12-01

Extensive purifying selection acting on synonymous sites in HIV-1 Group M sequences

by Ngandu, Nobubelo K, Scheffler, Konrad, Moore, Penny, Woodman, Zenda, Martin, Darren, Seoighe, Cathal
Published 2008

Benchmarking Multi-Rate Codon Models

by Delport, Wayne, Scheffler, Konrad, Gravenor, Mike B., Muse, Spencer V., Kosakovsky Pond, Sergei
Published 2010

Modeling HIV-1 Drug Resistance as Episodic Directional Selection

by Murrell, Ben, de Oliveira, Tulio, Seebregts, Chris, Kosakovsky Pond, Sergei L., Scheffler, Konrad
Published 2012

RELAX: Detecting Relaxed Selection in a Phylogenetic Framework

by Wertheim, Joel O., Murrell, Ben, Smith, Martin D., Kosakovsky Pond, Sergei L., Scheffler, Konrad
Published in Mol Biol Evol (2015)

Detecting Individual Sites Subject to Episodic Diversifying Selection

by Murrell, Ben, Wertheim, Joel O., Moola, Sasha, Weighill, Thomas, Scheffler, Konrad, Kosakovsky Pond, Sergei L.
Published 2012

Phylogenetic Relatedness of HIV-1 Donor and Recipient Populations

by Wertheim, Joel O., Scheffler, Konrad, Choi, Jun Yong, Smith, Davey M, Kosakovsky Pond, Sergei L
Published 2013

Evolutionary Origins of Human Herpes Simplex Viruses 1 and 2

by Wertheim, Joel O., Smith, Martin D., Smith, Davey M., Scheffler, Konrad, Kosakovsky Pond, Sergei L.
Published 2014

CodonTest: Modeling Amino Acid Substitution Preferences in Coding Sequences

by Delport, Wayne, Scheffler, Konrad, Botha, Gordon, Gravenor, Mike B., Muse, Spencer V., Kosakovsky Pond, Sergei L.
Published 2010

A Random Effects Branch-Site Model for Detecting Episodic Diversifying Selection

by Kosakovsky Pond, Sergei L., Murrell, Ben, Fourment, Mathieu, Frost, Simon D.W., Delport, Wayne, Scheffler, Konrad
Published 2011

FUBAR: A Fast, Unconstrained Bayesian AppRoximation for Inferring Selection

by Murrell, Ben, Moola, Sasha, Mabona, Amandla, Weighill, Thomas, Sheward, Daniel, Kosakovsky Pond, Sergei L., Scheffler, Konrad
Published 2013