Frequent Toggling between Alternative Amino Acids Is Driven by Selection in HIV-1

gan Delport, Wayne, Scheffler, Konrad, Seoighe, Cathal
Cyhoeddwyd 2008

Models of coding sequence evolution

gan Delport, Wayne, Scheffler, Konrad, Seoighe, Cathal
Cyhoeddwyd 2009

Epitope Discovery with Phylogenetic Hidden Markov Models

gan Lacerda, Miguel, Scheffler, Konrad, Seoighe, Cathal
Cyhoeddwyd 2010

Evidence of HIV-1 adaptation to host HLA alleles following chimp-to-human transmission

gan Ngandu, Nobubelo K, Seoighe, Cathal, Scheffler, Konrad
Cyhoeddwyd 2009

On the Validity of Evolutionary Models with Site-Specific Parameters

gan Scheffler, Konrad, Murrell, Ben, Kosakovsky Pond, Sergei L.
Cyhoeddwyd 2014

Correcting the Bias of Empirical Frequency Parameter Estimators in Codon Models

gan Kosakovsky Pond, Sergei, Delport, Wayne, Muse, Spencer V., Scheffler, Konrad
Cyhoeddwyd 2010

Timing the SARS-CoV-2 Index Case in Hubei Province

gan Pekar, Jonathan, Worobey, Michael, Moshiri, Niema, Scheffler, Konrad, Wertheim, Joel O.
Cyhoeddwyd yn bioRxiv (2020)

Timing the SARS-CoV-2 index case in Hubei province

gan Pekar, Jonathan, Worobey, Michael, Moshiri, Niema, Scheffler, Konrad, Wertheim, Joel O.
Cyhoeddwyd yn Science (2021)

Genome-wide survey of allele-specific splicing in humans

gan Nembaware, Victoria, Lupindo, Bukiwe, Schouest, Katherine, Spillane, Charles, Scheffler, Konrad, Seoighe, Cathal
Cyhoeddwyd 2008

Extensive purifying selection acting on synonymous sites in HIV-1 Group M sequences

gan Martin Darren, Woodman Zenda, Moore Penny, Scheffler Konrad, Ngandu Nobubelo K, Seoighe Cathal
Cyhoeddwyd 2008-12-01

Extensive purifying selection acting on synonymous sites in HIV-1 Group M sequences

gan Ngandu, Nobubelo K, Scheffler, Konrad, Moore, Penny, Woodman, Zenda, Martin, Darren, Seoighe, Cathal
Cyhoeddwyd 2008

Benchmarking Multi-Rate Codon Models

gan Delport, Wayne, Scheffler, Konrad, Gravenor, Mike B., Muse, Spencer V., Kosakovsky Pond, Sergei
Cyhoeddwyd 2010

Modeling HIV-1 Drug Resistance as Episodic Directional Selection

gan Murrell, Ben, de Oliveira, Tulio, Seebregts, Chris, Kosakovsky Pond, Sergei L., Scheffler, Konrad
Cyhoeddwyd 2012

RELAX: Detecting Relaxed Selection in a Phylogenetic Framework

gan Wertheim, Joel O., Murrell, Ben, Smith, Martin D., Kosakovsky Pond, Sergei L., Scheffler, Konrad
Cyhoeddwyd yn Mol Biol Evol (2015)

Detecting Individual Sites Subject to Episodic Diversifying Selection

gan Murrell, Ben, Wertheim, Joel O., Moola, Sasha, Weighill, Thomas, Scheffler, Konrad, Kosakovsky Pond, Sergei L.
Cyhoeddwyd 2012

Phylogenetic Relatedness of HIV-1 Donor and Recipient Populations

gan Wertheim, Joel O., Scheffler, Konrad, Choi, Jun Yong, Smith, Davey M, Kosakovsky Pond, Sergei L
Cyhoeddwyd 2013

Evolutionary Origins of Human Herpes Simplex Viruses 1 and 2

gan Wertheim, Joel O., Smith, Martin D., Smith, Davey M., Scheffler, Konrad, Kosakovsky Pond, Sergei L.
Cyhoeddwyd 2014

CodonTest: Modeling Amino Acid Substitution Preferences in Coding Sequences

gan Delport, Wayne, Scheffler, Konrad, Botha, Gordon, Gravenor, Mike B., Muse, Spencer V., Kosakovsky Pond, Sergei L.
Cyhoeddwyd 2010

A Random Effects Branch-Site Model for Detecting Episodic Diversifying Selection

gan Kosakovsky Pond, Sergei L., Murrell, Ben, Fourment, Mathieu, Frost, Simon D.W., Delport, Wayne, Scheffler, Konrad
Cyhoeddwyd 2011

FUBAR: A Fast, Unconstrained Bayesian AppRoximation for Inferring Selection

gan Murrell, Ben, Moola, Sasha, Mabona, Amandla, Weighill, Thomas, Sheward, Daniel, Kosakovsky Pond, Sergei L., Scheffler, Konrad
Cyhoeddwyd 2013