Frequent Toggling between Alternative Amino Acids Is Driven by Selection in HIV-1

per Delport, Wayne, Scheffler, Konrad, Seoighe, Cathal
Publicat 2008

Models of coding sequence evolution

per Delport, Wayne, Scheffler, Konrad, Seoighe, Cathal
Publicat 2009

Epitope Discovery with Phylogenetic Hidden Markov Models

per Lacerda, Miguel, Scheffler, Konrad, Seoighe, Cathal
Publicat 2010

Evidence of HIV-1 adaptation to host HLA alleles following chimp-to-human transmission

per Ngandu, Nobubelo K, Seoighe, Cathal, Scheffler, Konrad
Publicat 2009

On the Validity of Evolutionary Models with Site-Specific Parameters

per Scheffler, Konrad, Murrell, Ben, Kosakovsky Pond, Sergei L.
Publicat 2014

Correcting the Bias of Empirical Frequency Parameter Estimators in Codon Models

per Kosakovsky Pond, Sergei, Delport, Wayne, Muse, Spencer V., Scheffler, Konrad
Publicat 2010

Timing the SARS-CoV-2 Index Case in Hubei Province

per Pekar, Jonathan, Worobey, Michael, Moshiri, Niema, Scheffler, Konrad, Wertheim, Joel O.
Publicat a bioRxiv (2020)

Timing the SARS-CoV-2 index case in Hubei province

per Pekar, Jonathan, Worobey, Michael, Moshiri, Niema, Scheffler, Konrad, Wertheim, Joel O.
Publicat a Science (2021)

Genome-wide survey of allele-specific splicing in humans

per Nembaware, Victoria, Lupindo, Bukiwe, Schouest, Katherine, Spillane, Charles, Scheffler, Konrad, Seoighe, Cathal
Publicat 2008

Extensive purifying selection acting on synonymous sites in HIV-1 Group M sequences

per Martin Darren, Woodman Zenda, Moore Penny, Scheffler Konrad, Ngandu Nobubelo K, Seoighe Cathal
Publicat 2008-12-01

Extensive purifying selection acting on synonymous sites in HIV-1 Group M sequences

per Ngandu, Nobubelo K, Scheffler, Konrad, Moore, Penny, Woodman, Zenda, Martin, Darren, Seoighe, Cathal
Publicat 2008

Benchmarking Multi-Rate Codon Models

per Delport, Wayne, Scheffler, Konrad, Gravenor, Mike B., Muse, Spencer V., Kosakovsky Pond, Sergei
Publicat 2010

Modeling HIV-1 Drug Resistance as Episodic Directional Selection

per Murrell, Ben, de Oliveira, Tulio, Seebregts, Chris, Kosakovsky Pond, Sergei L., Scheffler, Konrad
Publicat 2012

RELAX: Detecting Relaxed Selection in a Phylogenetic Framework

per Wertheim, Joel O., Murrell, Ben, Smith, Martin D., Kosakovsky Pond, Sergei L., Scheffler, Konrad
Publicat a Mol Biol Evol (2015)

Detecting Individual Sites Subject to Episodic Diversifying Selection

per Murrell, Ben, Wertheim, Joel O., Moola, Sasha, Weighill, Thomas, Scheffler, Konrad, Kosakovsky Pond, Sergei L.
Publicat 2012

Phylogenetic Relatedness of HIV-1 Donor and Recipient Populations

per Wertheim, Joel O., Scheffler, Konrad, Choi, Jun Yong, Smith, Davey M, Kosakovsky Pond, Sergei L
Publicat 2013

Evolutionary Origins of Human Herpes Simplex Viruses 1 and 2

per Wertheim, Joel O., Smith, Martin D., Smith, Davey M., Scheffler, Konrad, Kosakovsky Pond, Sergei L.
Publicat 2014

CodonTest: Modeling Amino Acid Substitution Preferences in Coding Sequences

per Delport, Wayne, Scheffler, Konrad, Botha, Gordon, Gravenor, Mike B., Muse, Spencer V., Kosakovsky Pond, Sergei L.
Publicat 2010

A Random Effects Branch-Site Model for Detecting Episodic Diversifying Selection

per Kosakovsky Pond, Sergei L., Murrell, Ben, Fourment, Mathieu, Frost, Simon D.W., Delport, Wayne, Scheffler, Konrad
Publicat 2011

FUBAR: A Fast, Unconstrained Bayesian AppRoximation for Inferring Selection

per Murrell, Ben, Moola, Sasha, Mabona, Amandla, Weighill, Thomas, Sheward, Daniel, Kosakovsky Pond, Sergei L., Scheffler, Konrad
Publicat 2013