Frequent Toggling between Alternative Amino Acids Is Driven by Selection in HIV-1

بواسطة Delport, Wayne, Scheffler, Konrad, Seoighe, Cathal
منشور في 2008

Models of coding sequence evolution

بواسطة Delport, Wayne, Scheffler, Konrad, Seoighe, Cathal
منشور في 2009

Epitope Discovery with Phylogenetic Hidden Markov Models

بواسطة Lacerda, Miguel, Scheffler, Konrad, Seoighe, Cathal
منشور في 2010

Evidence of HIV-1 adaptation to host HLA alleles following chimp-to-human transmission

بواسطة Ngandu, Nobubelo K, Seoighe, Cathal, Scheffler, Konrad
منشور في 2009

On the Validity of Evolutionary Models with Site-Specific Parameters

بواسطة Scheffler, Konrad, Murrell, Ben, Kosakovsky Pond, Sergei L.
منشور في 2014

Correcting the Bias of Empirical Frequency Parameter Estimators in Codon Models

بواسطة Kosakovsky Pond, Sergei, Delport, Wayne, Muse, Spencer V., Scheffler, Konrad
منشور في 2010

Timing the SARS-CoV-2 Index Case in Hubei Province

بواسطة Pekar, Jonathan, Worobey, Michael, Moshiri, Niema, Scheffler, Konrad, Wertheim, Joel O.
الحاوية / القاعدة bioRxiv (2020)

Timing the SARS-CoV-2 index case in Hubei province

بواسطة Pekar, Jonathan, Worobey, Michael, Moshiri, Niema, Scheffler, Konrad, Wertheim, Joel O.
الحاوية / القاعدة Science (2021)

Genome-wide survey of allele-specific splicing in humans

بواسطة Nembaware, Victoria, Lupindo, Bukiwe, Schouest, Katherine, Spillane, Charles, Scheffler, Konrad, Seoighe, Cathal
منشور في 2008

Extensive purifying selection acting on synonymous sites in HIV-1 Group M sequences

بواسطة Martin Darren, Woodman Zenda, Moore Penny, Scheffler Konrad, Ngandu Nobubelo K, Seoighe Cathal
منشور في 2008-12-01

Extensive purifying selection acting on synonymous sites in HIV-1 Group M sequences

بواسطة Ngandu, Nobubelo K, Scheffler, Konrad, Moore, Penny, Woodman, Zenda, Martin, Darren, Seoighe, Cathal
منشور في 2008

Benchmarking Multi-Rate Codon Models

بواسطة Delport, Wayne, Scheffler, Konrad, Gravenor, Mike B., Muse, Spencer V., Kosakovsky Pond, Sergei
منشور في 2010

Modeling HIV-1 Drug Resistance as Episodic Directional Selection

بواسطة Murrell, Ben, de Oliveira, Tulio, Seebregts, Chris, Kosakovsky Pond, Sergei L., Scheffler, Konrad
منشور في 2012

RELAX: Detecting Relaxed Selection in a Phylogenetic Framework

بواسطة Wertheim, Joel O., Murrell, Ben, Smith, Martin D., Kosakovsky Pond, Sergei L., Scheffler, Konrad
الحاوية / القاعدة Mol Biol Evol (2015)

Detecting Individual Sites Subject to Episodic Diversifying Selection

بواسطة Murrell, Ben, Wertheim, Joel O., Moola, Sasha, Weighill, Thomas, Scheffler, Konrad, Kosakovsky Pond, Sergei L.
منشور في 2012

Phylogenetic Relatedness of HIV-1 Donor and Recipient Populations

بواسطة Wertheim, Joel O., Scheffler, Konrad, Choi, Jun Yong, Smith, Davey M, Kosakovsky Pond, Sergei L
منشور في 2013

Evolutionary Origins of Human Herpes Simplex Viruses 1 and 2

بواسطة Wertheim, Joel O., Smith, Martin D., Smith, Davey M., Scheffler, Konrad, Kosakovsky Pond, Sergei L.
منشور في 2014

CodonTest: Modeling Amino Acid Substitution Preferences in Coding Sequences

بواسطة Delport, Wayne, Scheffler, Konrad, Botha, Gordon, Gravenor, Mike B., Muse, Spencer V., Kosakovsky Pond, Sergei L.
منشور في 2010

A Random Effects Branch-Site Model for Detecting Episodic Diversifying Selection

بواسطة Kosakovsky Pond, Sergei L., Murrell, Ben, Fourment, Mathieu, Frost, Simon D.W., Delport, Wayne, Scheffler, Konrad
منشور في 2011

FUBAR: A Fast, Unconstrained Bayesian AppRoximation for Inferring Selection

بواسطة Murrell, Ben, Moola, Sasha, Mabona, Amandla, Weighill, Thomas, Sheward, Daniel, Kosakovsky Pond, Sergei L., Scheffler, Konrad
منشور في 2013