Fitness benefits of low infectivity in a spatially structured population of bacteriophages

af Roychoudhury, Pavitra, Shrestha, Neelima, Wiss, Valorie R., Krone, Stephen M.
Udgivet 2014

Adaptive regulatory substitutions affect multiple stages in the life cycle of the bacteriophage ϕX174

af Brown, Celeste J, Stancik, Amber D, Roychoudhury, Pavitra, Krone, Stephen M
Udgivet 2013

CRISPR/Cas9 and Genome Editing for Viral Disease - Is Resistance Futile?

af De Silva Feelixge, Harshana S, Stone, Daniel, Roychoudhury, Pavitra, Aubert, Martine, Jerome, Keith R
Udgivet i ACS Infect Dis (2018)

Sensitive Recovery of Complete SARS-CoV-2 Genomes from Clinical Samples by Use of Swift Biosciences’ SARS-CoV-2 Multiplex Amplicon Sequencing Panel

af Addetia, Amin, Lin, Michelle J., Peddu, Vikas, Roychoudhury, Pavitra, Jerome, Keith R., Greninger, Alexander L.
Udgivet i J Clin Microbiol (2020)

Pharmacodynamics of anti-HIV gene therapy using viral vectors and targeted endonucleases

af Roychoudhury, Pavitra, De Silva Feelixge, Harshana S., Pietz, Harlan L., Stone, Daniel, Jerome, Keith R., Schiffer, Joshua T.
Udgivet i J Antimicrob Chemother (2016)

A fixed spatial structure of CD8+ T cells in tissue during chronic HSV-2 infection

af Schiffer, Joshua T., Swan, Dave, Roychoudhury, Pavitra, Lund, Jennifer, Prlic, Martin, Zhu, Jia, Wald, Anna, Corey, Lawrence
Udgivet i J Immunol (2018)

Viral diversity is an obligate consideration in CRISPR/Cas9 designs for targeting the HIV reservoir

af Roychoudhury, Pavitra, De Silva Feelixge, Harshana, Reeves, Daniel, Mayer, Bryan T., Stone, Daniel, Schiffer, Joshua T., Jerome, Keith R.
Udgivet i BMC Biol (2018)

Identification of multiple large deletions in ORF7a resulting in in-frame gene fusions in clinical SARS-CoV-2 isolates

af Addetia, Amin, Xie, Hong, Roychoudhury, Pavitra, Shrestha, Lasata, Loprieno, Michelle, Huang, Meei-Li, Jerome, Keith R., Greninger, Alexander L.
Udgivet i J Clin Virol (2020)

The Impact of Spatial Structure on Viral Genomic Diversity Generated during Adaptation to Thermal Stress

af Ally, Dilara, Wiss, Valorie R., Deckert, Gail E., Green, Danielle, Roychoudhury, Pavitra, Wichman, Holly A., Brown, Celeste J., Krone, Stephen M.
Udgivet 2014

AAV-Mediated Delivery of Zinc Finger Nucleases Targeting Hepatitis B Virus Inhibits Active Replication

af Weber, Nicholas D., Stone, Daniel, Sedlak, Ruth Hall, De Silva Feelixge, Harshana S., Roychoudhury, Pavitra, Schiffer, Joshua T., Aubert, Martine, Jerome, Keith R.
Udgivet 2014

Detection of treatment-resistant infectious HIV after genome-directed antiviral endonuclease therapy

af De Silva Feelixge, Harshana S., Stone, Daniel, Pietz, Harlan L., Roychoudhury, Pavitra, Greninger, Alex L., Schiffer, Joshua T., Aubert, Martine, Jerome, Keith R.
Udgivet i Antiviral Res (2015)

In vivo dynamics of AAV-mediated gene delivery to sensory neurons of the trigeminal ganglia

af Dang, Chung H., Aubert, Martine, De Silva Feelixge, Harshana S., Diem, Kurt, Loprieno, Michelle A., Roychoudhury, Pavitra, Stone, Daniel, Jerome, Keith R.
Udgivet i Sci Rep (2017)

Tissue-resident T cell–derived cytokines eliminate herpes simplex virus-2–infected cells

af Roychoudhury, Pavitra, Swan, David A., Duke, Elizabeth, Corey, Lawrence, Zhu, Jia, Davé, Veronica, Spuhler, Laura Richert, Lund, Jennifer M., Prlic, Martin, Schiffer, Joshua T.
Udgivet i J Clin Invest (2020)

Neutralizing antibodies correlate with protection from SARS-CoV-2 in humans during a fishery vessel outbreak with high attack rate

af Addetia, Amin, Crawford, Katharine HD, Dingens, Adam, Zhu, Haiying, Roychoudhury, Pavitra, Huang, Meei-Li, Jerome, Keith R., Bloom, Jesse D., Greninger, Alexander L.
Udgivet i medRxiv (2020)

Tuning DNA binding affinity and cleavage specificity of an engineered gene-targeting nuclease via surface display, flow cytometry and cellular analyses

af Niyonzima, Nixon, Lambert, Abigail R., Werther, Rachel, De Silva Feelixge, Harshana, Roychoudhury, Pavitra, Greninger, Alexander L., Stone, Daniel, Stoddard, Barry L., Jerome, Keith R.
Udgivet i Protein Eng Des Sel (2017)

Neutralizing Antibodies Correlate with Protection from SARS-CoV-2 in Humans during a Fishery Vessel Outbreak with a High Attack Rate

af Addetia, Amin, Crawford, Katharine H. D., Dingens, Adam, Zhu, Haiying, Roychoudhury, Pavitra, Huang, Meei-Li, Jerome, Keith R., Bloom, Jesse D., Greninger, Alexander L.
Udgivet i J Clin Microbiol (2020)

Phylogenetic estimates of SARS-CoV-2 introductions into Washington State

af Tordoff, Diana M., Greninger, Alexander L., Roychoudhury, Pavitra, Shrestha, Lasata, Xie, Hong, Jerome, Keith R., Breit, Nathan, Huang, Meei-Li, Famulare, Mike, Herbeck, Joshua T.
Udgivet i medRxiv (2021)

A SARS-CoV-2 Nucleocapsid Variant that Affects Antigen Test Performance

af Bourassa, Lori, Perchetti, Garrett A., Phung, Quynh, Lin, Michelle J., Mills, Margaret G., Roychoudhury, Pavitra, Harmon, Kimberly G., Reed, Jonathan C., Greninger, Alexander L.
Udgivet i J Clin Virol (2021)

Ultrasensitive Capture of Human Herpes Simplex Virus Genomes Directly from Clinical Samples Reveals Extraordinarily Limited Evolution in Cell Culture

af Greninger, Alexander L., Roychoudhury, Pavitra, Xie, Hong, Casto, Amanda, Cent, Anne, Pepper, Gregory, Koelle, David M., Huang, Meei-Li, Wald, Anna, Johnston, Christine, Jerome, Keith R.
Udgivet i mSphere (2018)

Hybrid nanocarriers incorporating mechanistically distinct drugs for lymphatic CD4(+) T cell activation and HIV-1 latency reversal

af Cao, Shijie, Slack, Sarah D., Levy, Claire N., Hughes, Sean M., Jiang, Yonghou, Yogodzinski, Christopher, Roychoudhury, Pavitra, Jerome, Keith R., Schiffer, Joshua T., Hladik, Florian, Woodrow, Kim A.
Udgivet i Sci Adv (2019)