Scoring Functions for Protein-RNA Complex Structure Prediction: Advances, Applications, and Future Directions

od Qiu, Liming, Zou, Xiaoqin
Izdano u Commun Inf Syst (2020)

Recovery of Oculomotor Nerve Palsy after Endovascular and Surgical Treatment of Posterior Communicating Artery Aneurysms: A Single Institutional Experience

od Mak, Siu Kei David, Qiu, Liming, Ng, Yew Poh
Izdano u Asian J Neurosurg (2018)

Scaling and alpha-helix regulation of protein relaxation in a lipid bilayer

od Qiu, Liming, Buie, Creighton, Cheng, Kwan Hon, Vaughn, Mark W.
Izdano u J Chem Phys (2014)

Journal Watch: our panel of experts highlight the most important research articles across the spectrum of topics relevant to the field of CNS oncology

od Ng, Wai Hoe, Qiu, Liming, Lim, Jia Xu, Primalani, Nishal
Izdano u CNS Oncol (2019)

Lipid Insertion Domain Unfolding Regulates Protein Orientational Transition Behavior in a Lipid Bilayer

od Cheng, Kwan Hon, Qiu, Liming, Cheng, Sara Y., Vaughn, Mark W.
Izdano u Biophys Chem (2015)

Molecular Dynamics Simulations Reveal the Protective Role of Cholesterol in Beta Amyloid Protein-Induced Membrane Disruptions in Neuronal Membrane Mimics

od Qiu, Liming, Buie, Creighton, Reay, Andrew, Vaughn, Mark W., Cheng, Kwan Hon
Izdano 2011

Performance of MDockPP in CAPRI Rounds 28–29 and 31–35 including the prediction of water-mediated interactions

od Xu, Xianjin, Qiu, Liming, Yan, Chengfei, Ma, Zhiwei, Grinter, Sam Z., Zou, Xiaoqin
Izdano u Proteins (2016)

Identifying the molecular target sites for CFTR potentiators GLPG1837 and VX-770

od Yeh, Han-I, Qiu, Liming, Sohma, Yoshiro, Conrath, Katja, Zou, Xiaoqin, Hwang, Tzyh-Chang
Izdano u J Gen Physiol (2019)

Performance of Human and Server Prediction in CAPRI rounds 38–45

od Duan, Rui, Qiu, Liming, Xu, Xianjin, Ma, Zhiwei, Merideth, Benjamin Ryan, Shyu, Chi-Ren, Zou, Xiaoqin
Izdano u Proteins (2020)

Cholesterol Modulates the Interaction of β-Amyloid Peptide with Lipid Bilayers

od Qiu, Liming, Lewis, Anthony, Como, John, Vaughn, Mark W., Huang, Juyang, Somerharju, Pentti, Virtanen, Jorma, Cheng, Kwan Hon
Izdano 2009

The Venom of the Ectoparasitoid Wasp Pachycrepoideus vindemiae (Hymenoptera: Pteromalidae) Induces Apoptosis of Drosophila melanogaster Hemocytes

od Wan, Bin, Yang, Lei, Zhang, Jiao, Qiu, Liming, Fang, Qi, Yao, Hongwei, Poirié, Marylène, Gatti, Jean-Luc, Ye, Gongyin
Izdano u Insects (2020)

Functional Characterization of a Venom Protein Calreticulin in the Ectoparasitoid Pachycrepoideus vindemiae

od Yang, Lei, Wang, Beibei, Qiu, Liming, Wan, Bin, Yang, Yi, Liu, Mingming, Wang, Fang, Fang, Qi, Stanley, David W., Ye, Gongyin
Izdano u Insects (2019)

TRIC-A Channel Maintains Store Calcium Handling by Interacting with Type 2 Ryanodine Receptor in Cardiac Muscle

od Zhou, Xinyu, Park, Ki Ho, Yamazaki, Daiju, Lin, Pei-hui, Nishi, Miyuki, Ma, Zhiwei, Qiu, Liming, Murayama, Takashi, Zou, Xiaoqin, Takeshima, Hiroshi, Zhou, Jingsong, Ma, Jianjie
Izdano u Circ Res (2019)

Structural basis of prostate-specific membrane antigen recognition by the A9g RNA aptamer

od Ptacek, Jakub, Zhang, Dong, Qiu, Liming, Kruspe, Sven, Motlova, Lucia, Kolenko, Petr, Novakova, Zora, Shubham, Shambhavi, Havlinova, Barbora, Baranova, Petra, Chen, Shi-Jie, Zou, Xiaoqin, Giangrande, Paloma, Barinka, Cyril
Izdano u Nucleic Acids Res (2020)

The three-way junction structure of the HIV-1 PBS-segment binds host enzyme important for viral infectivity

od Song, Zhenwei, Gremminger, Thomas, Singh, Gatikrushna, Cheng, Yi, Li, Jun, Qiu, Liming, Ji, Juan, Lange, Margaret J, Zuo, Xiaobing, Chen, Shi-Jie, Zou, Xiaoqin, Boris-Lawrie, Kathleen, Heng, Xiao
Izdano u Nucleic Acids Res (2021)

Binding interface and impact on protease cleavage for an RNA aptamer to HIV-1 reverse transcriptase

od Nguyen, Phuong D M, Zheng, Jie, Gremminger, Thomas J, Qiu, Liming, Zhang, Dong, Tuske, Steve, Lange, Margaret J, Griffin, Patrick R, Arnold, Eddy, Chen, Shi-Jie, Zou, Xiaoqin, Heng, Xiao, Burke, Donald H
Izdano u Nucleic Acids Res (2020)

INI1/SMARCB1 Rpt1 domain mimics TAR RNA in binding to integrase to facilitate HIV-1 replication

od Dixit, Updesh, Bhutoria, Savita, Wu, Xuhong, Qiu, Liming, Spira, Menachem, Mathew, Sheeba, Harris, Richard, Adams, Lucas J., Cahill, Sean, Pathak, Rajiv, Rajesh Kumar, P., Nguyen, Minh, Acharya, Seetharama A., Brenowitz, Michael, Almo, Steven C., Zou, Xiaoqin, Steven, Alasdair C., Cowburn, David, Girvin, Mark, Kalpana, Ganjam V.
Izdano u Nat Commun (2021)

Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: A CASP‐CAPRI experiment

od Lensink, Marc F., Velankar, Sameer, Kryshtafovych, Andriy, Huang, Shen‐You, Schneidman‐Duhovny, Dina, Sali, Andrej, Segura, Joan, Fernandez‐Fuentes, Narcis, Viswanath, Shruthi, Elber, Ron, Grudinin, Sergei, Popov, Petr, Neveu, Emilie, Lee, Hasup, Baek, Minkyung, Park, Sangwoo, Heo, Lim, Rie Lee, Gyu, Seok, Chaok, Qin, Sanbo, Zhou, Huan‐Xiang, Ritchie, David W., Maigret, Bernard, Devignes, Marie‐Dominique, Ghoorah, Anisah, Torchala, Mieczyslaw, Chaleil, Raphaël A.G., Bates, Paul A., Ben‐Zeev, Efrat, Eisenstein, Miriam, Negi, Surendra S., Weng, Zhiping, Vreven, Thom, Pierce, Brian G., Borrman, Tyler M., Yu, Jinchao, Ochsenbein, Françoise, Guerois, Raphaël, Vangone, Anna, Rodrigues, João P.G.L.M., van Zundert, Gydo, Nellen, Mehdi, Xue, Li, Karaca, Ezgi, Melquiond, Adrien S.J., Visscher, Koen, Kastritis, Panagiotis L., Bonvin, Alexandre M.J.J., Xu, Xianjin, Qiu, Liming, Yan, Chengfei, Li, Jilong, Ma, Zhiwei, Cheng, Jianlin, Zou, Xiaoqin, Shen, Yang, Peterson, Lenna X., Kim, Hyung‐Rae, Roy, Amit, Han, Xusi, Esquivel‐Rodriguez, Juan, Kihara, Daisuke, Yu, Xiaofeng, Bruce, Neil J., Fuller, Jonathan C., Wade, Rebecca C., Anishchenko, Ivan, Kundrotas, Petras J., Vakser, Ilya A., Imai, Kenichiro, Yamada, Kazunori, Oda, Toshiyuki, Nakamura, Tsukasa, Tomii, Kentaro, Pallara, Chiara, Romero‐Durana, Miguel, Jiménez‐García, Brian, Moal, Iain H., Férnandez‐Recio, Juan, Joung, Jong Young, Kim, Jong Yun, Joo, Keehyoung, Lee, Jooyoung, Kozakov, Dima, Vajda, Sandor, Mottarella, Scott, Hall, David R., Beglov, Dmitri, Mamonov, Artem, Xia, Bing, Bohnuud, Tanggis, Del Carpio, Carlos A., Ichiishi, Eichiro, Marze, Nicholas, Kuroda, Daisuke, Roy Burman, Shourya S., Gray, Jeffrey J., Chermak, Edrisse, Cavallo, Luigi, Oliva, Romina, Tovchigrechko, Andrey, Wodak, Shoshana J.
Izdano u Proteins (2016)

Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment

od Lensink, Marc F., Brysbaert, Guillaume, Nadzirin, Nurul, Velankar, Sameer, Chaleil, Raphaël A. G., Gerguri, Tereza, Bates, Paul A., Laine, Elodie, Carbone, Alessandra, Grudinin, Sergei, Kong, Ren, Liu, Ran-Ran, Xu, Xi-Ming, Shi, Hang, Chang, Shan, Eisenstein, Miriam, Karczynska, Agnieszka, Czaplewski, Cezary, Lubecka, Emilia, Lipska, Agnieszka, Krupa, Paweł, Mozolewska, Magdalena, Golon, Łukasz, Samsonov, Sergey, Liwo, Adam, Crivelli, Silvia, Pagès, Guillaume, Karasikov, Mikhail, Kadukova, Maria, Yan, Yumeng, Huang, Sheng-You, Rosell, Mireia, Rodríguez-Lumbreras, Luis A., Romero-Durana, Miguel, Díaz-Bueno, Lucía, Fernandez-Recio, Juan, Christoffer, Charles, Terashi, Genki, Shin, Woong-Hee, Aderinwale, Tunde, Subraman, Sai Raghavendra Maddhuri Venkata, Kihara, Daisuke, Kozakov, Dima, Vajda, Sandor, Porter, Kathryn, Padhorny, Dzmitry, Desta, Israel, Beglov, Dmitri, Ignatov, Mikhail, Kotelnikov, Sergey, Moal, Iain H., Ritchie, David W., de Beauchêne, Isaure Chauvot, Maigret, Bernard, Devignes, Marie-Dominique, Echartea, Maria E. Ruiz, Barradas-Bautista, Didier, Cao, Zhen, Cavallo, Luigi, Oliva, Romina, Cao, Yue, Shen, Yang, Baek, Minkyung, Park, Taeyong, Woo, Hyeonuk, Seok, Chaok, Braitbard, Merav, Bitton, Lirane, Scheidman-Duhovny, Dina, Dapkūnas, Justas, Olechnovič, Kliment, Venclovas, Česlovas, Kundrotas, Petras J., Belkin, Saveliy, Chakravarty, Devlina, Badal, Varsha D., Vakser, Ilya A., Vreven, Thom, Vangaveti, Sweta, Borrman, Tyler, Weng, Zhiping, Guest, Johnathan D., Gowthaman, Ragul, Pierce, Brian G., Xu, Xianjin, Duan, Rui, Qiu, Liming, Hou, Jie, Merideth, Benjamin Ryan, Ma, Zhiwei, Cheng, Jianlin, Zou, Xiaoqin, Koukos, Panagiotis I., Roel-Touris, Jorge, Ambrosetti, Francesco, Geng, Cunliang, Schaarschmidt, Jörg, Trellet, Mikael E., Melquiond, Adrien S. J., Xue, Li, Jiménez-García, Brian, van Noort, Charlotte W., Honorato, Rodrigo V., Bonvin, Alexandre M. J. J., Wodak, Shoshana J.
Izdano u Proteins (2019)