The Replication Domain Model: regulating replicon firing in the context of large-scale chromosome architecture

Autor Pope, Benjamin D., Gilbert, David M.
Vydáno 2013

Domain-wide regulation of DNA replication timing during mammalian development

Autor Pope, Benjamin D., Hiratani, Ichiro, Gilbert, David M.
Vydáno 2010

Many paths lead chromatin to the nuclear periphery

Autor Gordon, Molly R., Pope, Benjamin D., Sima, Jiao, Gilbert, David M.
Vydáno v Bioessays (2015)

Genome-Scale Analysis of Replication Timing: from Bench to Bioinformatics

Autor Ryba, Tyrone, Battaglia, Dana, Pope, Benjamin D., Hiratani, Ichiro, Gilbert, David M.
Vydáno 2011

Microenvironmental Control of Adipocyte Fate and Function

Autor Pope, Benjamin D., Warren, Curtis R., Parker, Kevin Kit, Cowan, Chad A.
Vydáno v Trends Cell Biol (2016)

Building Biomimetic Potency Tests for Islet Transplantation

Autor Glieberman, Aaron L., Pope, Benjamin D., Melton, Douglas A., Parker, Kevin Kit
Vydáno v Diabetes (2021)

DNA Replication Timing Is Maintained Genome-Wide in Primary Human Myoblasts Independent of D4Z4 Contraction in FSH Muscular Dystrophy

Autor Pope, Benjamin D., Tsumagari, Koji, Battaglia, Dana, Ryba, Tyrone, Hiratani, Ichiro, Ehrlich, Melanie, Gilbert, David M.
Vydáno 2011

Correction: DNA Replication Timing Is Maintained Genome-Wide in Primary Human Myoblasts Independent of D4Z4 Contraction in FSH Muscular Dystrophy

Autor Pope, Benjamin D., Tsumagari, Koji, Battaglia, Dana, Ryba, Tyrone, Hiratani, Ichiro, Ehrlich, Melanie, Gilbert, David M.
Vydáno 2012

The role of extracellular matrix in normal and pathological pregnancy: Future applications of microphysiological systems in reproductive medicine

Autor O’Connor, Blakely B, Pope, Benjamin D, Peters, Michael M, Ris-Stalpers, Carrie, Parker, Kevin K
Vydáno v Exp Biol Med (Maywood) (2020)

Abnormal developmental control of replication-timing domains in pediatric acute lymphoblastic leukemia

Autor Ryba, Tyrone, Battaglia, Dana, Chang, Bill H., Shirley, James W., Buckley, Quinton, Pope, Benjamin D., Devidas, Meenakshi, Druker, Brian J., Gilbert, David M.
Vydáno 2012

Replication-timing boundaries facilitate cell-type and species-specific regulation of a rearranged human chromosome in mouse

Autor Pope, Benjamin D., Chandra, Tamir, Buckley, Quinton, Hoare, Matthew, Ryba, Tyrone, Wiseman, Frances K., Kuta, Anna, Wilson, Michael D., Odom, Duncan T., Gilbert, David M.
Vydáno 2012

Mitoregulin Controls β-Oxidation in Human and Mouse Adipocytes

Autor Friesen, Max, Warren, Curtis R., Yu, Haojie, Toyohara, Takafumi, Ding, Qiurong, Florido, Mary H.C., Sayre, Carolyn, Pope, Benjamin D., Goff, Loyal A., Rinn, John L., Cowan, Chad A.
Vydáno v Stem Cell Reports (2020)

Fattening Chips: Hypertrophy, Feeding, and Fasting of Human White Adipocytes In Vitro

Autor Pope, Benjamin D., Warren, Curtis R., Dahl, Madeleine, Pizza, Christina V., Henze, Douglas E., Sinatra, Nina R., Gonzalez, Grant M., Chang, Huibin, Liu, Qihan, Glieberman, Aaron L., Ferrier, John P., Cowan, Chad A., Parker, Kevin Kit
Vydáno v Lab Chip (2020)

Synchronized Stimulation and Continuous Insulin Sensing in a Microfluidic Human Islet on a Chip Designed for Scalable Manufacturing

Autor Glieberman, Aaron L., Pope, Benjamin D., Zimmerman, John F., Liu, Qihan, Ferrier, John P., Kenty, Jennifer H. R., Schrell, Adrian M., Mukhitov, Nikita, Shores, Kevin L., Tepole, Adrian Buganza, Melton, Douglas A., Roper, Michael G., Parker, Kevin Kit
Vydáno v Lab Chip (2019)

Production-scale fibronectin nanofibers promote wound closure and tissue repair in a dermal mouse model

Autor Chantre, Christophe O., Campbell, Patrick H., Golecki, Holly M., Buganza, Adrian T., Capulli, Andrew K., Deravi, Leila F., Dauth, Stephanie, Sheehy, Sean P., Paten, Jeffrey A., Gledhill, Karl, Doucet, Yanne S., Abaci, Hasan E., Ahn, Seungkuk, Pope, Benjamin D., Ruberti, Jeffrey W., Hoerstrup, Simon P., Christiano, Angela M., Parker, Kevin Kit
Vydáno v Biomaterials (2018)

Topologically associating domains are stable units of replication-timing regulation

Autor Pope, Benjamin D., Ryba, Tyrone, Dileep, Vishnu, Yue, Feng, Wu, Weisheng, Denas, Olgert, Vera, Daniel L., Wang, Yanli, Hansen, R. Scott, Canfield, Theresa K., Thurman, Robert E., Cheng, Yong, Gülsoy, Günhan, Dennis, Jonathan H., Snyder, Michael P., Stamatoyannopoulos, John A., Taylor, James, Hardison, Ross C., Kahveci, Tamer, Ren, Bing, Gilbert, David M.
Vydáno v Nature (2014)

Independence of Repressive Histone Marks and Chromatin Compaction during Senescent Heterochromatic Layer Formation

Autor Chandra, Tamir, Kirschner, Kristina, Thuret, Jean-Yves, Pope, Benjamin D., Ryba, Tyrone, Newman, Scott, Ahmed, Kashif, Samarajiwa, Shamith A., Salama, Rafik, Carroll, Thomas, Stark, Rory, Janky, Rekin’s, Narita, Masako, Xue, Lixiang, Chicas, Agustin, Nũnez, Sabrina, Janknecht, Ralf, Hayashi-Takanaka, Yoko, Wilson, Michael D., Marshall, Aileen, Odom, Duncan T., Babu, M. Madan, Bazett-Jones, David P., Tavaré, Simon, Edwards, Paul A.W., Lowe, Scott W., Kimura, Hiroshi, Gilbert, David M., Narita, Masashi
Vydáno 2012

A comparative encyclopedia of DNA elements in the mouse genome

Autor Yue, Feng, Cheng, Yong, Breschi, Alessandra, Vierstra, Jeff, Wu, Weisheng, Ryba, Tyrone, Sandstrom, Richard, Ma, Zhihai, Davis, Carrie, Pope, Benjamin D., Shen, Yin, Pervouchine, Dmitri D., Djebali, Sarah, Thurman, Robert E., Kaul, Rajinder, Rynes, Eric, Kirilusha, Anthony, Marinov, Georgi K., Williams, Brian A., Trout, Diane, Amrhein, Henry, Fisher-Aylor, Katherine, Antoshechkin, Igor, DeSalvo, Gilberto, See, Lei-Hoon, Fastuca, Meagan, Drenkow, Jorg, Zaleski, Chris, Dobin, Alex, Prieto, Pablo, Lagarde, Julien, Bussotti, Giovanni, Tanzer, Andrea, Denas, Olgert, Li, Kanwei, Bender, M. A., Zhang, Miaohua, Byron, Rachel, Groudine, Mark T., McCleary, David, Pham, Long, Ye, Zhen, Kuan, Samantha, Edsall, Lee, Wu, Yi-Chieh, Rasmussen, Matthew D., Bansal, Mukul S., Kellis, Manolis, Keller, Cheryl A., Morrissey, Christapher S., Mishra, Tejaswini, Jain, Deepti, Dogan, Nergiz, Harris, Robert S., Cayting, Philip, Kawli, Trupti, Boyle, Alan P., Euskirchen, Ghia, Kundaje, Anshul, Lin, Shin, Lin, Yiing, Jansen, Camden, Malladi, Venkat S., Cline, Melissa S., Erickson, Drew T., Kirkup, Vanessa M., Learned, Katrina, Sloan, Cricket A., Rosenbloom, Kate R., Lacerda de Sousa, Beatriz, Beal, Kathryn, Pignatelli, Miguel, Flicek, Paul, Lian, Jin, Kahveci, Tamer, Lee, Dongwon, James Kent, W., Ramalho Santos, Miguel, Herrero, Javier, Notredame, Cedric, Johnson, Audra, Vong, Shinny, Lee, Kristen, Bates, Daniel, Neri, Fidencio, Diegel, Morgan, Canfield, Theresa, Sabo, Peter J., Wilken, Matthew S., Reh, Thomas A., Giste, Erika, Shafer, Anthony, Kutyavin, Tanya, Haugen, Eric, Dunn, Douglas, Reynolds, Alex P., Neph, Shane, Humbert, Richard, Scott Hansen, R., De Bruijn, Marella, Selleri, Licia, Rudensky, Alexander, Josefowicz, Steven, Samstein, Robert, Eichler, Evan E., Orkin, Stuart H., Levasseur, Dana, Papayannopoulou, Thalia, Chang, Kai-Hsin, Skoultchi, Arthur, Gosh, Srikanta, Disteche, Christine, Treuting, Piper, Wang, Yanli, Weiss, Mitchell J., Blobel, Gerd A., Cao, Xiaoyi, Zhong, Sheng, Wang, Ting, Good, Peter J., Lowdon, Rebecca F., Adams, Leslie B., Zhou, Xiao-Qiao, Pazin, Michael J., Feingold, Elise A., Wold, Barbara, Taylor, James, Mortazavi, Ali, Weissman, Sherman M., Stamatoyannopoulos, John A., Snyder, Michael P., Guigo, Roderic, Gingeras, Thomas R., Gilbert, David M., Hardison, Ross C., Beer, Michael A., Ren, Bing
Vydáno v Nature (2014)