The Replication Domain Model: regulating replicon firing in the context of large-scale chromosome architecture

od Pope, Benjamin D., Gilbert, David M.
Izdano 2013

Domain-wide regulation of DNA replication timing during mammalian development

od Pope, Benjamin D., Hiratani, Ichiro, Gilbert, David M.
Izdano 2010

Many paths lead chromatin to the nuclear periphery

od Gordon, Molly R., Pope, Benjamin D., Sima, Jiao, Gilbert, David M.
Izdano u Bioessays (2015)

Genome-Scale Analysis of Replication Timing: from Bench to Bioinformatics

od Ryba, Tyrone, Battaglia, Dana, Pope, Benjamin D., Hiratani, Ichiro, Gilbert, David M.
Izdano 2011

Microenvironmental Control of Adipocyte Fate and Function

od Pope, Benjamin D., Warren, Curtis R., Parker, Kevin Kit, Cowan, Chad A.
Izdano u Trends Cell Biol (2016)

Building Biomimetic Potency Tests for Islet Transplantation

od Glieberman, Aaron L., Pope, Benjamin D., Melton, Douglas A., Parker, Kevin Kit
Izdano u Diabetes (2021)

DNA Replication Timing Is Maintained Genome-Wide in Primary Human Myoblasts Independent of D4Z4 Contraction in FSH Muscular Dystrophy

od Pope, Benjamin D., Tsumagari, Koji, Battaglia, Dana, Ryba, Tyrone, Hiratani, Ichiro, Ehrlich, Melanie, Gilbert, David M.
Izdano 2011

Correction: DNA Replication Timing Is Maintained Genome-Wide in Primary Human Myoblasts Independent of D4Z4 Contraction in FSH Muscular Dystrophy

od Pope, Benjamin D., Tsumagari, Koji, Battaglia, Dana, Ryba, Tyrone, Hiratani, Ichiro, Ehrlich, Melanie, Gilbert, David M.
Izdano 2012

The role of extracellular matrix in normal and pathological pregnancy: Future applications of microphysiological systems in reproductive medicine

od O’Connor, Blakely B, Pope, Benjamin D, Peters, Michael M, Ris-Stalpers, Carrie, Parker, Kevin K
Izdano u Exp Biol Med (Maywood) (2020)

Abnormal developmental control of replication-timing domains in pediatric acute lymphoblastic leukemia

od Ryba, Tyrone, Battaglia, Dana, Chang, Bill H., Shirley, James W., Buckley, Quinton, Pope, Benjamin D., Devidas, Meenakshi, Druker, Brian J., Gilbert, David M.
Izdano 2012

Replication-timing boundaries facilitate cell-type and species-specific regulation of a rearranged human chromosome in mouse

od Pope, Benjamin D., Chandra, Tamir, Buckley, Quinton, Hoare, Matthew, Ryba, Tyrone, Wiseman, Frances K., Kuta, Anna, Wilson, Michael D., Odom, Duncan T., Gilbert, David M.
Izdano 2012

Mitoregulin Controls β-Oxidation in Human and Mouse Adipocytes

od Friesen, Max, Warren, Curtis R., Yu, Haojie, Toyohara, Takafumi, Ding, Qiurong, Florido, Mary H.C., Sayre, Carolyn, Pope, Benjamin D., Goff, Loyal A., Rinn, John L., Cowan, Chad A.
Izdano u Stem Cell Reports (2020)

Fattening Chips: Hypertrophy, Feeding, and Fasting of Human White Adipocytes In Vitro

od Pope, Benjamin D., Warren, Curtis R., Dahl, Madeleine, Pizza, Christina V., Henze, Douglas E., Sinatra, Nina R., Gonzalez, Grant M., Chang, Huibin, Liu, Qihan, Glieberman, Aaron L., Ferrier, John P., Cowan, Chad A., Parker, Kevin Kit
Izdano u Lab Chip (2020)

Synchronized Stimulation and Continuous Insulin Sensing in a Microfluidic Human Islet on a Chip Designed for Scalable Manufacturing

od Glieberman, Aaron L., Pope, Benjamin D., Zimmerman, John F., Liu, Qihan, Ferrier, John P., Kenty, Jennifer H. R., Schrell, Adrian M., Mukhitov, Nikita, Shores, Kevin L., Tepole, Adrian Buganza, Melton, Douglas A., Roper, Michael G., Parker, Kevin Kit
Izdano u Lab Chip (2019)

Production-scale fibronectin nanofibers promote wound closure and tissue repair in a dermal mouse model

od Chantre, Christophe O., Campbell, Patrick H., Golecki, Holly M., Buganza, Adrian T., Capulli, Andrew K., Deravi, Leila F., Dauth, Stephanie, Sheehy, Sean P., Paten, Jeffrey A., Gledhill, Karl, Doucet, Yanne S., Abaci, Hasan E., Ahn, Seungkuk, Pope, Benjamin D., Ruberti, Jeffrey W., Hoerstrup, Simon P., Christiano, Angela M., Parker, Kevin Kit
Izdano u Biomaterials (2018)

Topologically associating domains are stable units of replication-timing regulation

od Pope, Benjamin D., Ryba, Tyrone, Dileep, Vishnu, Yue, Feng, Wu, Weisheng, Denas, Olgert, Vera, Daniel L., Wang, Yanli, Hansen, R. Scott, Canfield, Theresa K., Thurman, Robert E., Cheng, Yong, Gülsoy, Günhan, Dennis, Jonathan H., Snyder, Michael P., Stamatoyannopoulos, John A., Taylor, James, Hardison, Ross C., Kahveci, Tamer, Ren, Bing, Gilbert, David M.
Izdano u Nature (2014)

Independence of Repressive Histone Marks and Chromatin Compaction during Senescent Heterochromatic Layer Formation

od Chandra, Tamir, Kirschner, Kristina, Thuret, Jean-Yves, Pope, Benjamin D., Ryba, Tyrone, Newman, Scott, Ahmed, Kashif, Samarajiwa, Shamith A., Salama, Rafik, Carroll, Thomas, Stark, Rory, Janky, Rekin’s, Narita, Masako, Xue, Lixiang, Chicas, Agustin, Nũnez, Sabrina, Janknecht, Ralf, Hayashi-Takanaka, Yoko, Wilson, Michael D., Marshall, Aileen, Odom, Duncan T., Babu, M. Madan, Bazett-Jones, David P., Tavaré, Simon, Edwards, Paul A.W., Lowe, Scott W., Kimura, Hiroshi, Gilbert, David M., Narita, Masashi
Izdano 2012

A comparative encyclopedia of DNA elements in the mouse genome

od Yue, Feng, Cheng, Yong, Breschi, Alessandra, Vierstra, Jeff, Wu, Weisheng, Ryba, Tyrone, Sandstrom, Richard, Ma, Zhihai, Davis, Carrie, Pope, Benjamin D., Shen, Yin, Pervouchine, Dmitri D., Djebali, Sarah, Thurman, Robert E., Kaul, Rajinder, Rynes, Eric, Kirilusha, Anthony, Marinov, Georgi K., Williams, Brian A., Trout, Diane, Amrhein, Henry, Fisher-Aylor, Katherine, Antoshechkin, Igor, DeSalvo, Gilberto, See, Lei-Hoon, Fastuca, Meagan, Drenkow, Jorg, Zaleski, Chris, Dobin, Alex, Prieto, Pablo, Lagarde, Julien, Bussotti, Giovanni, Tanzer, Andrea, Denas, Olgert, Li, Kanwei, Bender, M. A., Zhang, Miaohua, Byron, Rachel, Groudine, Mark T., McCleary, David, Pham, Long, Ye, Zhen, Kuan, Samantha, Edsall, Lee, Wu, Yi-Chieh, Rasmussen, Matthew D., Bansal, Mukul S., Kellis, Manolis, Keller, Cheryl A., Morrissey, Christapher S., Mishra, Tejaswini, Jain, Deepti, Dogan, Nergiz, Harris, Robert S., Cayting, Philip, Kawli, Trupti, Boyle, Alan P., Euskirchen, Ghia, Kundaje, Anshul, Lin, Shin, Lin, Yiing, Jansen, Camden, Malladi, Venkat S., Cline, Melissa S., Erickson, Drew T., Kirkup, Vanessa M., Learned, Katrina, Sloan, Cricket A., Rosenbloom, Kate R., Lacerda de Sousa, Beatriz, Beal, Kathryn, Pignatelli, Miguel, Flicek, Paul, Lian, Jin, Kahveci, Tamer, Lee, Dongwon, James Kent, W., Ramalho Santos, Miguel, Herrero, Javier, Notredame, Cedric, Johnson, Audra, Vong, Shinny, Lee, Kristen, Bates, Daniel, Neri, Fidencio, Diegel, Morgan, Canfield, Theresa, Sabo, Peter J., Wilken, Matthew S., Reh, Thomas A., Giste, Erika, Shafer, Anthony, Kutyavin, Tanya, Haugen, Eric, Dunn, Douglas, Reynolds, Alex P., Neph, Shane, Humbert, Richard, Scott Hansen, R., De Bruijn, Marella, Selleri, Licia, Rudensky, Alexander, Josefowicz, Steven, Samstein, Robert, Eichler, Evan E., Orkin, Stuart H., Levasseur, Dana, Papayannopoulou, Thalia, Chang, Kai-Hsin, Skoultchi, Arthur, Gosh, Srikanta, Disteche, Christine, Treuting, Piper, Wang, Yanli, Weiss, Mitchell J., Blobel, Gerd A., Cao, Xiaoyi, Zhong, Sheng, Wang, Ting, Good, Peter J., Lowdon, Rebecca F., Adams, Leslie B., Zhou, Xiao-Qiao, Pazin, Michael J., Feingold, Elise A., Wold, Barbara, Taylor, James, Mortazavi, Ali, Weissman, Sherman M., Stamatoyannopoulos, John A., Snyder, Michael P., Guigo, Roderic, Gingeras, Thomas R., Gilbert, David M., Hardison, Ross C., Beer, Michael A., Ren, Bing
Izdano u Nature (2014)