New advances in sequence assembly

Por Phillippy, Adam M.
Publicado no Genome Res (2017)

Irreconcilable differences: divorcing geographic mutation and recombination rates within a global MRSA clone

Por Treangen, Todd J, Phillippy, Adam M
Publicado em 2012

The rise of a digital immune system

Por Schatz, Michael C, Phillippy, Adam M
Publicado em 2012

Genome assembly forensics: finding the elusive mis-assembly

Por Phillippy, Adam M, Schatz, Michael C, Pop, Mihai
Publicado em 2008

Interactive metagenomic visualization in a Web browser

Por Ondov, Brian D, Bergman, Nicholas H, Phillippy, Adam M
Publicado em 2011

Fast algorithms for large-scale genome alignment and comparison

Por Delcher, Arthur L., Phillippy, Adam, Carlton, Jane, Salzberg, Steven L.
Publicado em 2002

Efficient oligonucleotide probe selection for pan-genomic tiling arrays

Por Phillippy, Adam M, Deng, Xiangyu, Zhang, Wei, Salzberg, Steven L
Publicado em 2009

Hawkeye: an interactive visual analytics tool for genome assemblies

Por Schatz, Michael C, Phillippy, Adam M, Shneiderman, Ben, Salzberg, Steven L
Publicado em 2007

Insignia: a DNA signature search web server for diagnostic assay development

Por Phillippy, Adam M., Ayanbule, Kunmi, Edwards, Nathan J., Salzberg, Steven L.
Publicado em 2009

The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes

Por Treangen, Todd J, Ondov, Brian D, Koren, Sergey, Phillippy, Adam M
Publicado no Genome Biol (2014)

A Fast Approximate Algorithm for Mapping Long Reads to Large Reference Databases

Por Jain, Chirag, Dilthey, Alexander, Koren, Sergey, Aluru, Srinivas, Phillippy, Adam M.
Publicado no J Comput Biol (2018)

Probing the pan-genome of Listeria monocytogenes: new insights into intraspecific niche expansion and genomic diversification

Por Deng, Xiangyu, Phillippy, Adam M, Li, Zengxin, Salzberg, Steven L, Zhang, Wei
Publicado em 2010

Automated ensemble assembly and validation of microbial genomes

Por Koren, Sergey, Treangen, Todd J, Hill, Christopher M, Pop, Mihai, Phillippy, Adam M
Publicado em 2014

Identification and Genomic Analysis of a Novel Group C Orthobunyavirus Isolated from a Mosquito Captured near Iquitos, Peru

Por Treangen, Todd J., Schoeler, George, Phillippy, Adam M., Bergman, Nicholas H., Turell, Michael J.
Publicado no PLoS Negl Trop Dis (2016)

MUMmer4: A fast and versatile genome alignment system

Por Marçais, Guillaume, Delcher, Arthur L., Phillippy, Adam M., Coston, Rachel, Salzberg, Steven L., Zimin, Aleksey
Publicado no PLoS Comput Biol (2018)

Versatile and open software for comparing large genomes

Por Kurtz, Stefan, Phillippy, Adam, Delcher, Arthur L, Smoot, Michael, Shumway, Martin, Antonescu, Corina, Salzberg, Steven L
Publicado em 2004

Transcriptomic Responses of Salmonella enterica Serovars Enteritidis and Typhimurium to Chlorine-Based Oxidative Stress

Por Wang, Siyun, Phillippy, Adam M., Deng, Kaiping, Rui, Xiaoqian, Li, Zengxin, Tortorello, Mary Lou, Zhang, Wei
Publicado em 2010

Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation

Por Koren, Sergey, Walenz, Brian P., Berlin, Konstantin, Miller, Jason R., Bergman, Nicholas H., Phillippy, Adam M.
Publicado no Genome Res (2017)

Integrated Microbial Survey Analysis of Prokaryotic Communities for the PhyloChip Microarray

Por Schatz, Michael C., Phillippy, Adam M., Gajer, Pawel, DeSantis, Todd Z., Andersen, Gary L., Ravel, Jacques
Publicado em 2010

Mash: fast genome and metagenome distance estimation using MinHash

Por Ondov, Brian D., Treangen, Todd J., Melsted, Páll, Mallonee, Adam B., Bergman, Nicholas H., Koren, Sergey, Phillippy, Adam M.
Publicado no Genome Biol (2016)