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Fast algorithms for large-scale genome alignment and comparison

We describe a suffix-tree algorithm that can align the entire genome sequences of eukaryotic and prokaryotic organisms with minimal use of computer time and memory. The new system, MUMmer 2, runs three times faster while using one-third as much memory as the original MUMmer system. It has been used...

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Detalhes bibliográficos
Main Authors: Delcher, Arthur L., Phillippy, Adam, Carlton, Jane, Salzberg, Steven L.
Formato: Artigo
Idioma:Inglês
Publicado em: Oxford University Press 2002
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Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC117189/
https://ncbi.nlm.nih.gov/pubmed/12034836
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