Interactive metagenomic visualization in a Web browser

door Ondov, Brian D, Bergman, Nicholas H, Phillippy, Adam M
Gepubliceerd in 2011

Efficient mapping of Applied Biosystems SOLiD sequence data to a reference genome for functional genomic applications

door Ondov, Brian D., Varadarajan, Anjana, Passalacqua, Karla D., Bergman, Nicholas H.
Gepubliceerd in 2008

The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes

door Treangen, Todd J, Ondov, Brian D, Koren, Sergey, Phillippy, Adam M
Gepubliceerd in Genome Biol (2014)

BLAST-based validation of metagenomic sequence assignments

door Bazinet, Adam L., Ondov, Brian D., Sommer, Daniel D., Ratnayake, Shashikala
Gepubliceerd in PeerJ (2018)

An alignment algorithm for bisulfite sequencing using the Applied Biosystems SOLiD System

door Ondov, Brian D., Cochran, Charles, Landers, Mark, Meredith, Gavin D., Dudas, Miroslav, Bergman, Nicholas H.
Gepubliceerd in 2010

Structure and Complexity of a Bacterial Transcriptome

door Passalacqua, Karla D., Varadarajan, Anjana, Ondov, Brian D., Okou, David T., Zwick, Michael E., Bergman, Nicholas H.
Gepubliceerd in 2009

Strand-Specific RNA-Seq Reveals Ordered Patterns of Sense and Antisense Transcription in Bacillus anthracis

door Passalacqua, Karla D., Varadarajan, Anjana, Weist, Charlotte, Ondov, Brian D., Byrd, Benjamin, Read, Timothy D., Bergman, Nicholas H.
Gepubliceerd in 2012

Mash Screen: high-throughput sequence containment estimation for genome discovery

door Ondov, Brian D., Starrett, Gabriel J., Sappington, Anna, Kostic, Aleksandra, Koren, Sergey, Buck, Christopher B., Phillippy, Adam M.
Gepubliceerd in Genome Biol (2019)

Mash: fast genome and metagenome distance estimation using MinHash

door Ondov, Brian D., Treangen, Todd J., Melsted, Páll, Mallonee, Adam B., Bergman, Nicholas H., Koren, Sergey, Phillippy, Adam M.
Gepubliceerd in Genome Biol (2016)

Genome Sequence of the Attenuated Carbosap Vaccine Strain of Bacillus anthracis

door Harrington, Robin, Ondov, Brian D., Radune, Diana, Friss, Mary Beth, Klubnik, Joy, Diviak, Lynn, Hnath, Jonathan, Cendrowski, Stephen R., Blank, Thomas E., Karaolis, David, Friedlander, Arthur M., Burans, James P., Rosovitz, M. J., Treangen, Todd, Phillippy, Adam M., Bergman, Nicholas H.
Gepubliceerd in 2013

Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic Microbiome Meet-up, College P...

door Meisel, Jacquelyn S., Nasko, Daniel J., Brubach, Brian, Cepeda-Espinoza, Victoria, Chopyk, Jessica, Corrada-Bravo, Héctor, Fedarko, Marcus, Ghurye, Jay, Javkar, Kiran, Olson, Nathan D., Shah, Nidhi, Allard, Sarah M., Bazinet, Adam L., Bergman, Nicholas H., Brown, Alexis, Caporaso, J. Gregory, Conlan, Sean, DiRuggiero, Jocelyne, Forry, Samuel P., Hasan, Nur A., Kralj, Jason, Luethy, Paul M., Milton, Donald K., Ondov, Brian D., Preheim, Sarah, Ratnayake, Shashikala, Rogers, Stephanie M., Rosovitz, M. J., Sakowski, Eric G., Schliebs, Nils Oliver, Sommer, Daniel D., Ternus, Krista L., Uritskiy, Gherman, Zhang, Sean X., Pop, Mihai, Treangen, Todd J.
Gepubliceerd in Microbiome (2018)