Interactive metagenomic visualization in a Web browser

Por Ondov, Brian D, Bergman, Nicholas H, Phillippy, Adam M
Publicado em 2011

Efficient mapping of Applied Biosystems SOLiD sequence data to a reference genome for functional genomic applications

Por Ondov, Brian D., Varadarajan, Anjana, Passalacqua, Karla D., Bergman, Nicholas H.
Publicado em 2008

The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes

Por Treangen, Todd J, Ondov, Brian D, Koren, Sergey, Phillippy, Adam M
Publicado no Genome Biol (2014)

BLAST-based validation of metagenomic sequence assignments

Por Bazinet, Adam L., Ondov, Brian D., Sommer, Daniel D., Ratnayake, Shashikala
Publicado no PeerJ (2018)

An alignment algorithm for bisulfite sequencing using the Applied Biosystems SOLiD System

Por Ondov, Brian D., Cochran, Charles, Landers, Mark, Meredith, Gavin D., Dudas, Miroslav, Bergman, Nicholas H.
Publicado em 2010

Structure and Complexity of a Bacterial Transcriptome

Por Passalacqua, Karla D., Varadarajan, Anjana, Ondov, Brian D., Okou, David T., Zwick, Michael E., Bergman, Nicholas H.
Publicado em 2009

Strand-Specific RNA-Seq Reveals Ordered Patterns of Sense and Antisense Transcription in Bacillus anthracis

Por Passalacqua, Karla D., Varadarajan, Anjana, Weist, Charlotte, Ondov, Brian D., Byrd, Benjamin, Read, Timothy D., Bergman, Nicholas H.
Publicado em 2012

Mash Screen: high-throughput sequence containment estimation for genome discovery

Por Ondov, Brian D., Starrett, Gabriel J., Sappington, Anna, Kostic, Aleksandra, Koren, Sergey, Buck, Christopher B., Phillippy, Adam M.
Publicado no Genome Biol (2019)

Mash: fast genome and metagenome distance estimation using MinHash

Por Ondov, Brian D., Treangen, Todd J., Melsted, Páll, Mallonee, Adam B., Bergman, Nicholas H., Koren, Sergey, Phillippy, Adam M.
Publicado no Genome Biol (2016)

Genome Sequence of the Attenuated Carbosap Vaccine Strain of Bacillus anthracis

Por Harrington, Robin, Ondov, Brian D., Radune, Diana, Friss, Mary Beth, Klubnik, Joy, Diviak, Lynn, Hnath, Jonathan, Cendrowski, Stephen R., Blank, Thomas E., Karaolis, David, Friedlander, Arthur M., Burans, James P., Rosovitz, M. J., Treangen, Todd, Phillippy, Adam M., Bergman, Nicholas H.
Publicado em 2013

Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic Microbiome Meet-up, College P...

Por Meisel, Jacquelyn S., Nasko, Daniel J., Brubach, Brian, Cepeda-Espinoza, Victoria, Chopyk, Jessica, Corrada-Bravo, Héctor, Fedarko, Marcus, Ghurye, Jay, Javkar, Kiran, Olson, Nathan D., Shah, Nidhi, Allard, Sarah M., Bazinet, Adam L., Bergman, Nicholas H., Brown, Alexis, Caporaso, J. Gregory, Conlan, Sean, DiRuggiero, Jocelyne, Forry, Samuel P., Hasan, Nur A., Kralj, Jason, Luethy, Paul M., Milton, Donald K., Ondov, Brian D., Preheim, Sarah, Ratnayake, Shashikala, Rogers, Stephanie M., Rosovitz, M. J., Sakowski, Eric G., Schliebs, Nils Oliver, Sommer, Daniel D., Ternus, Krista L., Uritskiy, Gherman, Zhang, Sean X., Pop, Mihai, Treangen, Todd J.
Publicado no Microbiome (2018)